PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003702.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 296aa    MW: 32994.1 Da    PI: 8.0597
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003702.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed++l  ++k +  g+W+  +++ g++R++k+c++rw++yl
      CCG003702.1 14 RGAWTALEDKILMAYIKAHEEGNWRNLPERAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding49.68.8e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
      CCG003702.1  67 RGNISLDEEELIIRLHNLLGNR-WSLIAGRLP-GRTGNEIKNYWNTT 111
                      788999****************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.608961IPR017930Myb domain
SuperFamilySSF466891.29E-2612108IPR009057Homeodomain-like
SMARTSM007174.2E-111363IPR001005SANT/Myb domain
PfamPF002495.3E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-211568IPR009057Homeodomain-like
CDDcd001676.32E-81661No hitNo description
PROSITE profilePS5129423.94562116IPR017930Myb domain
SMARTSM007171.2E-1466114IPR001005SANT/Myb domain
PfamPF002495.6E-1467111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2369115IPR009057Homeodomain-like
CDDcd001671.01E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGRSPCGSKE GLNRGAWTAL EDKILMAYIK AHEEGNWRNL PERAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SLDEEELIIR LHNLLGNRWS LIAGRLPGRT GNEIKNYWNT TLGKKARGQS  120
SSRSKKSSQS KSRAIKPMTS TLPSKSTETT QAIRAQATRG TKVLLSLQSP PPTRTPLPPP  180
EILSSTAMND PSQASLINHQ QDGPNFYCGT EVVLACHDDS DFFNFGKWNE IQPNDIDGDT  240
LMTSGCNRNL SGGSEYSLGL FDDLMQKDWA LNHCPEDNAT LDLESLAHLL DSEEWP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-211211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5731520.0FJ573152.1 Populus tremuloides MYB transcription factor R2R3-like protein (MYB086) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013071.10.0PREDICTED: myb-related protein 308-like isoform X2
TrEMBLA0A2K1WW120.0A0A2K1WW12_POPTR; Uncharacterized protein
TrEMBLC5HYE70.0C5HYE7_POPTM; MYB transcription factor R2R3-like protein (Fragment)
STRINGPOPTR_0018s05530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.14e-56myb domain protein 7