PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003714.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family DBB
Protein Properties Length: 298aa    MW: 32246.1 Da    PI: 6.2236
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003714.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.42.2e-06447542
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                  C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  CCG003714.1  4 QCNVCEAAEANVLCCADEAALCWTCDEKVHAAnklaskHQRVPL 47
                 7******99*********************66899999999986 PP
2zf-B_box279.1e-095390237
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                 +++kC+ ++e    +fC +++ llC++C +++H    H
  CCG003714.1 53 QMPKCDICQETAGFFFCLEDRALLCRKCDVAIHTAntH 90
                 799*******98999******************65453 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.779147IPR000315B-box-type zinc finger
CDDcd000215.79E-7347No hitNo description
SMARTSM003364.4E-11447IPR000315B-box-type zinc finger
SuperFamilySSF578456.41E-54594No hitNo description
SMARTSM003363.9E-145299IPR000315B-box-type zinc finger
PROSITE profilePS501198.665299IPR000315B-box-type zinc finger
PfamPF006433.2E-65390IPR000315B-box-type zinc finger
CDDcd000211.74E-75599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MKIQCNVCEA AEANVLCCAD EAALCWTCDE KVHAANKLAS KHQRVPLSTS SPQMPKCDIC  60
QETAGFFFCL EDRALLCRKC DVAIHTANTH VSVHQRFLLT GVKVGLEPTG LGATSSSRKS  120
PSGEKKTSET NSCPVSRRGT LLPLANPCNQ VSPVNVCGVG DFGPAKLPYS GGSATSSISQ  180
WQIDEFLELP EFNQNYGYID NGSSKADSGK RGDSDSSAIL RSTEEEVDDE ECLGQVPDSS  240
RAVPQMPSPP TASGLYWPKS FHNHSETAIF VPDICCSVVQ NCHYSEQRGT VSKRQRHL
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1827000.0AC182700.2 Populus trichocarpa clone Pop1-73H20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044583.10.0PREDICTED: B-box zinc finger protein 22-like
RefseqXP_011044584.10.0PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM29e-99BBX22_ARATH; B-box zinc finger protein 22
TrEMBLB9I1Q40.0B9I1Q4_POPTR; Uncharacterized protein
STRINGPOPTR_0011s10670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-101light-regulated zinc finger protein 1