PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003735.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family YABBY
Protein Properties Length: 241aa    MW: 26980.8 Da    PI: 9.694
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003735.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY22.43.5e-07324324
        YABBY  3 vfssseqvCyvqCnfCntilav 24
                 +   se vCyv+Cn Cntilav
  CCG003735.2  3 LELVSEPVCYVHCNLCNTILAV 24
                 5667999*************99 PP
2YABBY180.59.7e-567520823170
        YABBY  23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPe 120
                  avsvPs+ lf++vtvrCGhC +llsvn+  + q+l+ ++      ++ ll + ++ ++n+ s     ++ ++ +     se++++e pr+p +irPPe
  CCG003735.2  75 AVSVPSSILFNIVTVRCGHCGNLLSVNMGASLQTLPIQDP-----QKLLLINSEDLNKNFGSS----SKCNKVT----ASESTEHEPPRMP-AIRPPE 158
                  8************************************996.....223344444444444432....2222222....2566778888865.5***** PP

        YABBY 121 krqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  krqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  CCG003735.2 159 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 208
                  ************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.6E-5975208IPR006780YABBY protein
SuperFamilySSF470952.75E-8151201IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.2E-5156202IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSLELVSEPV CYVHCNLCNT ILAVLGFFPG RIVYPWQKVS IAPKGKGYGG KRERERRETF  60
ESRASPYSYY HVRSAVSVPS SILFNIVTVR CGHCGNLLSV NMGASLQTLP IQDPQKLLLI  120
NSEDLNKNFG SSSKCNKVTA SESTEHEPPR MPAIRPPEKR QRVPSAYNRF IKEEIQRIKA  180
SNPDISHREA FSTAAKNWAH FPHIHFGLKL DSNKHAKLDH QSFAGEGTQK TSGLYEINGS  240
L
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1474020.0EF147402.1 Populus trichocarpa clone WS01230_J05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044616.11e-123PREDICTED: putative axial regulator YABBY 2 isoform X4
SwissprotQ9XFB02e-63YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A2K2C1G21e-120A0A2K2C1G2_POPTR; Uncharacterized protein
STRINGPOPTR_0001s22180.11e-118(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.19e-66YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]