PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003803.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 228aa    MW: 25726.1 Da    PI: 9.1151
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003803.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.47e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l+d+++++G g+W++ ++  g+ R++k+c++rw +yl
      CCG003803.1 13 KGAWSKEEDQKLIDYIRKHGEGCWRSLPQAAGLLRCGKSCRLRWINYL 60
                     79******************************99************97 PP
2Myb_DNA-binding53.46e-1766111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
      CCG003803.1  66 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-24462IPR009057Homeodomain-like
PROSITE profilePS5129418.049860IPR017930Myb domain
SuperFamilySSF466898.99E-2911107IPR009057Homeodomain-like
SMARTSM007173.3E-141262IPR001005SANT/Myb domain
PfamPF002492.2E-161360IPR001005SANT/Myb domain
CDDcd001677.30E-121560No hitNo description
PROSITE profilePS5129426.24661115IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.5E-2663116IPR009057Homeodomain-like
SMARTSM007174.2E-1665113IPR001005SANT/Myb domain
PfamPF002491.3E-1566111IPR001005SANT/Myb domain
CDDcd001671.91E-1168111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MRKPCCDKQD TNKGAWSKEE DQKLIDYIRK HGEGCWRSLP QAAGLLRCGK SCRLRWINYL  60
RPDLKRGNFG EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LRRKLINMGI  120
DPNNHRLNQN LQRSRNPPIP ASGTSSGLKI QAKQQPTKPR VDSEQTSDAG SCLEDEPCAL  180
PDLNLNLDLT MSIPSSSIAH VEGNPKDNES NFLRPQKIAP SSNLLLSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29101154108B-MYB
1h8a_C3e-291011524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038671.11e-167PREDICTED: transcription repressor MYB6-like
SwissprotQ388515e-78MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A2K1YSF21e-155A0A2K1YSF2_POPTR; Uncharacterized protein
STRINGPOPTR_0010s12420.11e-156(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-80myb domain protein 6