PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003977.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 90aa    MW: 10382.9 Da    PI: 8.5174
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003977.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.3e-0819571654
                 HHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH 16 iNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 i +  ++Lr+llP+ + + +s K+s + +L+++++YIk+L
  CCG003977.1 19 IINLVSKLRQLLPEiR-QRRSDKVSASKVLQETCNYIKNL 57
                 5566789*******77.9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.829357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-9477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-81372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-61857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MSSRRSSQSS VPRITDDQII NLVSKLRQLL PEIRQRRSDK VSASKVLQET CNYIKNLHRE  60
VDDLSERLSQ LLATIDFDSP EAEIIRSLIM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12636RQLLPEIRQRR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1474931e-136EF147493.1 Populus trichocarpa clone WS01231_N01 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013171.14e-57PREDICTED: transcription factor PRE1-like
SwissprotQ9LJX12e-39PRE5_ARATH; Transcription factor PRE5
TrEMBLB9IJW01e-49B9IJW0_POPTR; Uncharacterized protein
STRINGPOPTR_0017s11760.12e-50(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.15e-40bHLH family protein