PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG004143.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 481aa MW: 53512.5 Da PI: 6.3741

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG004143.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53	7.7e-17	60	104	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+++++da k++G W++I +++g ++t+ q++s+ qk+ CCG004143.1 60 RERWTEEEHKKFLDALKLYGRA-WRRIEEHLG-TKTAVQIRSHAQKF 104 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.74E-16	54	109	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.113	55	109	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.1E-16	58	107	IPR006447	Myb domain, plants
SMART	SM00717	2.9E-13	59	107	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-9	60	100	IPR009057	Homeodomain-like
Pfam	PF00249	9.4E-14	60	103	IPR001005	SANT/Myb domain
CDD	cd00167	1.95E-10	62	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MAIQDQCGGN RSNLVLPAGN GILPSATLQK ATDHQLKEQF SCGSDYSPKA RKPYTITKQR 60 ERWTEEEHKK FLDALKLYGR AWRRIEEHLG TKTAVQIRSH AQKFFSKVAR ESGGSNTSSE 120 EPIEIPPPRP KRKPMHPYPR KLAHPLERDL LILENPLRSS SPNFSISEHE NQSPTSVLSA 180 VGSDALGSTD SDMPSHSLSP VSSAGGVHHV DSSPEDNGSP SPPTASSAPD EQFPKVQKFD 240 SFPKENVSSE EPITLKLFGR TLLVTECHKP SYPSMGTSKL SLTDATEEKL VQPLTLNITA 300 AKLQSRNEES TWSPLPHGSH GALYQMQFKK ENSSPTENDS AALMPWWGSY EGMPFPFITF 360 HKHEPAVEIL DSNGDEVQDK EIHKEVSWTG SNSESVNEGE NVDKIMDAET ESHQFSYEEN 420 EPSPFLELKP KKKSASSGSK AFNEKCTKGF VPYKKRTAER DSQSSTITGE EREEQRIRLC 480 L

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MAIQDQCGGN RSNLVLPAGN GILPSATLQK ATDHQLKEQF SCGSDYSPKA RKPYTITKQR  60
ERWTEEEHKK FLDALKLYGR AWRRIEEHLG TKTAVQIRSH AQKFFSKVAR ESGGSNTSSE  120
EPIEIPPPRP KRKPMHPYPR KLAHPLERDL LILENPLRSS SPNFSISEHE NQSPTSVLSA  180
VGSDALGSTD SDMPSHSLSP VSSAGGVHHV DSSPEDNGSP SPPTASSAPD EQFPKVQKFD  240
SFPKENVSSE EPITLKLFGR TLLVTECHKP SYPSMGTSKL SLTDATEEKL VQPLTLNITA  300
AKLQSRNEES TWSPLPHGSH GALYQMQFKK ENSSPTENDS AALMPWWGSY EGMPFPFITF  360
HKHEPAVEIL DSNGDEVQDK EIHKEVSWTG SNSESVNEGE NVDKIMDAET ESHQFSYEEN  420
EPSPFLELKP KKKSASSGSK AFNEKCTKGF VPYKKRTAER DSQSSTITGE EREEQRIRLC  480
L

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147972	0.0	EF147972.1 Populus trichocarpa clone WS0126_F21 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011013212.1	0.0	PREDICTED: protein REVEILLE 1-like
TrEMBL	A0A2K1X7Z1	0.0	A0A2K1X7Z1_POPTR; Uncharacterized protein
STRING	POPTR_0017s01380.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2956	33	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	2e-59	MYB_related family protein