PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004173.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 436aa    MW: 48756.7 Da    PI: 8.0329
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004173.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.5e-15130175147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++ a+++  gR++k+c++rw++ 
      CCG004173.1 130 RGHWRPAEDSKLKELVALYGPQNWNLMAEKLR-GRSGKSCRLRWFNQ 175
                      899*****************************.***********996 PP
2Myb_DNA-binding50.54.8e-16184226347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++ ++E+e+l  a++ +G++ W++Iar ++ gRt++ +k++w+ +
      CCG004173.1 184 AFNEDEEERLMAAHRIYGNK-WALIARFFP-GRTDNAVKNHWHVV 226
                      789*****************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2125176IPR017930Myb domain
SMARTSM007171.0E-13129178IPR001005SANT/Myb domain
PfamPF002491.1E-14130175IPR001005SANT/Myb domain
SuperFamilySSF466892.85E-26130227IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-24131183IPR009057Homeodomain-like
CDDcd001672.56E-12133174No hitNo description
PROSITE profilePS5129426.263177231IPR017930Myb domain
SMARTSM007171.0E-13181229IPR001005SANT/Myb domain
PfamPF002495.3E-13184225IPR001005SANT/Myb domain
CDDcd001676.75E-11184227No hitNo description
Gene3DG3DSA:1.10.10.603.3E-19184230IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MEMTLQHFYN ITCCHQENDG IPSHYTTSTT TPCNSSAMET LNDMGSLSVD PNSRMPLNIC  60
SSVCFDMGQR GFALEGKCCS NRLENNPCSE EVGDDGKEQK HKAALIENIE ESLVNGKEIM  120
EGREPNICNR GHWRPAEDSK LKELVALYGP QNWNLMAEKL RGRSGKSCRL RWFNQLDPKI  180
KRAAFNEDEE ERLMAAHRIY GNKWALIARF FPGRTDNAVK NHWHVVMARK YREQSCIYRR  240
RKRTQAVQRR VDNAGDSVSR NTVRNTDPNS NIICNSRIIK PSCIPFSPLI GGSNCTYAKM  300
TAGLLFSRSH HGSLAEETPR FFSGHQMHYN MLRDSDTCTV FHAMQQPSNR HFPGFSDAVA  360
SSATQATVSE PSSSSLSVAE NTEASSFEIT TTSPPFIDFL GVGATGSARV SKTCNMYSRS  420
NSVAYDSTGI IEGKEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-331302307107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035778.10.0PREDICTED: myb-like DNA-binding protein myb-1 isoform X2
TrEMBLB9IJZ80.0B9IJZ8_POPTR; Uncharacterized protein
STRINGPOPTR_0017s12140.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2807933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-66myb domain protein 105