PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004342.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 142aa    MW: 15761.1 Da    PI: 9.4726
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004342.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00111032123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C++ F++   L  H  +H
  CCG004342.1 10 FECKTCNRQFPSFQALGGHRASH 32
                 89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.36E-9877No hitNo description
PfamPF139122.1E-13934IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8271037IPR007087Zinc finger, C2H2
SMARTSM003550.161032IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
PfamPF139124.4E-105479IPR007087Zinc finger, C2H2
SMARTSM003550.55577IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.9125577IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MSNISPARVF ECKTCNRQFP SFQALGGHRA SHKKPRLMGG EGSFETQSPA KPKTHECSIC  60
GLEFAIGQAL GGHMRRHRAA LNDQNQVDPL KPPSTDDQKA VPVMKRSTSR RVLSLDLNLT  120
PYENDMELFK LGTTAPMVNC FF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN7005230.0JN700523.1 Populus trichocarpa C2H2-type zinc finger protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027131.11e-103PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD47e-36ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLG8IEK93e-98G8IEK9_POPTR; C2H2 family protein
STRINGPOPTR_0010s21650.11e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.13e-38C2H2 family protein