PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004543.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 135aa    MW: 14384.4 Da    PI: 10.7812
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004543.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.68.4e-191649134
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                 C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk+
  CCG004543.1 16 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKK 49
                 ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.7E-131072IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-131050No hitNo description
Gene3DG3DSA:3.30.50.105.3E-161450IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.78E-121550No hitNo description
PfamPF003209.6E-171650IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401641IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.071646IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MSSKSLETES PLKKTCADCG TSKTPLWRGG PAGPKSLCNA CGIRSRKKKR DILGLSKGGA  60
AANDKRAKKG SSNNGSSNYN SNNKQLGDGL KQRLLALGRE VLVQGSTVER RRRKLGEEEQ  120
AAVLLMALSY GSVYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108114ERRRRKL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046398.17e-92PREDICTED: GATA transcription factor 16-like isoform X1
SwissprotQ8LG106e-44GAT15_ARATH; GATA transcription factor 15
TrEMBLU5FXH18e-73U5FXH1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s00360.11e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.15e-44GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]