PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004567.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 470aa    MW: 50779.3 Da    PI: 6.941
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004567.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.63.7e-141151343
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 i n+  r+ ++ kRr g+lKK +EL +LC++e+ vii+s++
  CCG004567.1 11 IVNDAARKASLKKRRVGLLKKVSELTILCGIEAFVIIYSPD 51
                 679999*********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.217149IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-22294IPR002100Transcription factor, MADS-box
CDDcd002661.42E-25285No hitNo description
PRINTSPR004041.1E-5323IPR002100Transcription factor, MADS-box
PfamPF003193.9E-131151IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MTRKKVKLTW IVNDAARKAS LKKRRVGLLK KVSELTILCG IEAFVIIYSP DEPEPAVWPS  60
RPEAQQLLMR FQNMPDMERY KKMMNQETYL KERMAKLNDQ SRKHLKNNRV LEMAGLMQHV  120
YQDKGFDGLD ETQLCGLTWL VEEKMKEIRK RVEYFQQIPP LQPGAFPPGP FPSNHQDPKK  180
HDGGDDDGTS GQAGGEPGDG RNNPKDGCAS WDHWFTDIIN NTEHNVAGGS SARNVLGLPH  240
LINFTGVSSG WGPDIGFHHG HNGGGGSSFR DIFGLGLPHS RNMGGIRDGH NFDLGQLPHE  300
NESLRGSSSA GGNNFDLRLP LGSNMTGGNN AGNSFDHWLP RDPGFNPGGN NGVGHNFDLD  360
LPRGNDVGGN STGENNFDLW LPHVNNTGRN SAVVNNVDPW LAHGDMGGEN LGLGLLPGSN  420
FAGSGTGGNP FHGLQGMHRR GYSGGGAGSA SGSDLRPPGS FGTGSSDNIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLTWIVNDAARKASLKKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2101320.0AC210132.1 Populus trichocarpa clone POP011-D09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046439.10.0PREDICTED: circumsporozoite protein-like
TrEMBLB9H9L60.0B9H9L6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s21630.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-31AGAMOUS-like 80