PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004628.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 263aa    MW: 30095.6 Da    PI: 5.0946
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004628.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.9e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l + ++++G  +W+ I++  g+ R++k+c++rw +yl
      CCG004628.1 14 KGAWSQEEDDKLREHIEKYGLWNWREIPKFAGLSRCGKSCRLRWMNYL 61
                     79******************99************************97 PP
2Myb_DNA-binding53.74.8e-1768111247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+ T+eE++l++++++++G++ W+ Ia++++ gRt++++k++w+ +
      CCG004628.1  68 GNYTKEEEDLILKLHEKHGNK-WSIIAAKLP-GRTDNEVKNYWHAH 111
                      789******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.429961IPR017930Myb domain
SuperFamilySSF466892.57E-3111108IPR009057Homeodomain-like
SMARTSM007171.3E-131363IPR001005SANT/Myb domain
PfamPF002491.2E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-231568IPR009057Homeodomain-like
CDDcd001673.19E-111661No hitNo description
PROSITE profilePS5129425.72862116IPR017930Myb domain
SMARTSM007172.8E-1766114IPR001005SANT/Myb domain
PfamPF002497.6E-1668111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2669115IPR009057Homeodomain-like
CDDcd001678.33E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVRAPYFDKN GIKKGAWSQE EDDKLREHIE KYGLWNWREI PKFAGLSRCG KSCRLRWMNY  60
LRPDVKHGNY TKEEEDLILK LHEKHGNKWS IIAAKLPGRT DNEVKNYWHA HLKKRTVKNQ  120
NTLALKEKCS GFTSESEGSQ MNKETEAKTV ASCTPSNPIL ESTPLSPETS CSELSNLSTD  180
FAPKLPVSAG TNLNNIAEDI LPSVPTFDES IGDFWTEPFV ADSAYNQDNF PGISFYQEEP  240
FVSYYDDGID FYYEMMQELP GNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047494.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLB9INU40.0B9INU4_POPTR; Uncharacterized protein
STRINGPOPTR_0019s14130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.17e-55myb domain protein 15