PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004822.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 345aa    MW: 38652.3 Da    PI: 5.9447
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004822.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97.1e-20198248255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr ++ +g+++AeIrdp   + +  r++lg+f+ta eAa+a+++a+ kl+g
  CCG004822.1 198 HYRGVRHRP-WGKYAAEIRDP---NrRGSRVWLGTFDTALEAARAYDRAAFKLRG 248
                  7*****888.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.0E-32197257IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23198257IPR016177DNA-binding domain
CDDcd000185.67E-31198256No hitNo description
PfamPF008472.0E-13198248IPR001471AP2/ERF domain
SMARTSM003804.9E-36198262IPR001471AP2/ERF domain
PROSITE profilePS5103224.447198256IPR001471AP2/ERF domain
PRINTSPR003673.6E-10199210IPR001471AP2/ERF domain
PRINTSPR003673.6E-10222238IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSTEVSTALE FIKHHLLGDL LSPVAPSSSA SFCQFSTNTE ISTYETTSCC SQTSSSDSST  60
AFPYFLDSPG PDFFVFSSDF SPAQDNKTNI FEFEAKPEII DLLTPKPLDP NSHLNSQPSS  120
SSSSSDSSNL FEFVKPQIIS HPGNNFFYEE SKPRVEPTRK PSLKISLPSR KSEWIQFSNT  180
NPQTVDDNSG VAIEQKRHYR GVRHRPWGKY AAEIRDPNRR GSRVWLGTFD TALEAARAYD  240
RAAFKLRGSK AILNFPLEAG RCDVRSNEEG ERKRLRECDA EEREDVKRVM RVVKREEPEM  300
DVLLTPSCCP AVWDTCGDSK GVFNLPPLSP LSPHPLLGYP QLMVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-29197257161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-29197257464ATERF1
3gcc_A4e-29197257464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2089990.0AC208999.1 Populus trichocarpa clone POP021-B12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047597.10.0PREDICTED: ethylene-responsive transcription factor 6-like
SwissprotO803412e-63EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A2K2BY440.0A0A2K2BY44_POPTR; Uncharacterized protein
STRINGPOPTR_0001s15400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.19e-46ethylene responsive element binding factor 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]