PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004965.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 535aa    MW: 58497.1 Da    PI: 6.5699
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004965.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.81.9e-32237293259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgynWrKYGqK++kgse+prsYY+Ct+ +Cpvkkkve+s+ d +++ei+Y+g+Hnh+
  CCG004965.1 237 DDGYNWRKYGQKPIKGSEYPRSYYKCTHLNCPVKKKVEHSS-DDQITEIIYKGQHNHD 293
                  8****************************************.99*************7 PP
2WRKY107.19e-34421479159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver++ dpk+v++tYeg+Hnh+
  CCG004965.1 421 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASADPKAVITTYEGKHNHD 479
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.537231295IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-29233294IPR003657WRKY domain
SuperFamilySSF1182906.15E-26234294IPR003657WRKY domain
SMARTSM007746.0E-37236294IPR003657WRKY domain
PfamPF031061.2E-25237293IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-37407481IPR003657WRKY domain
SuperFamilySSF1182901.57E-29413481IPR003657WRKY domain
PROSITE profilePS5081138.985416481IPR003657WRKY domain
SMARTSM007744.3E-40421480IPR003657WRKY domain
PfamPF031061.9E-26422479IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MAEKQENPTT AAPAKPTITL PPRPSMETLF SGGLSAGPVT LVSSFFADTP YPESDYPSFS  60
QLLAGAMASP IARPAFFTDN LIPNNNNTNT NTTTTAIPSS KENGINSYSN LGFKPSRPTN  120
LVVALSPLFT VLPGLSPSGL LDSPAFFSPG ALVQVTAQAA LFAQSQMHMQ VQYQPSSVTA  180
AKELLTQYPS FNPGEALQQQ QLMPPSTSDA QNSMVEPAEL SQSERKYQPP AGDKPTDDGY  240
NWRKYGQKPI KGSEYPRSYY KCTHLNCPVK KKVEHSSDDQ ITEIIYKGQH NHDQLNKLSR  300
DGDDSNGSIH SQSKPEVVSQ AHAGNVNEMT ETLPAHSVTT RDQESTQADL SEPPGSSDNE  360
EAGNAAVQEE ERGDDEPIPK RRQVWDVSLQ IDVVTSEATL PHKTITEPKI IVQTRSEVDL  420
LDDGYRWRKY GQKVVKGNPH PRSYYKCTSA GCNVRKHVER ASADPKAVIT TYEGKHNHDV  480
PAARNSGHNT ANTNAAPFKP QKVVAEKHPL LKGMDFGNNN QRPLLLQLKE DKIAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-40237482878Probable WRKY transcription factor 4
2lex_A8e-40237482878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013412.10.0PREDICTED: probable WRKY transcription factor 3 isoform X1
RefseqXP_011015537.10.0PREDICTED: probable WRKY transcription factor 3 isoform X1
SwissprotQ9ZQ701e-129WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2K2ATH30.0A0A2K2ATH3_POPTR; Uncharacterized protein
STRINGPOPTR_0004s12000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-116WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]