PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004970.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 118aa    MW: 14075 Da    PI: 8.8808
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004970.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.6e-106100395
                  EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  k+l +++  k++rl +p + ++++   +g+  +s++ +  d + ++W++k+++r+ ++    +l++ W ++v+++gLk gD v++++++++++e   +
  CCG004970.1   6 KIL-SESDAKNKRLEFPSRSLSAFpmpDGQ--NSVQFVAFDMNEQQWSLKVSIRNEGRYpkPWLKGEWHDYVHQKGLKKGDKVILTMHEEENGERIYR 100
                  555.455566778********999866444..677788888999*******99888877889************************877777665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.0373105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-124102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-9593IPR015300DNA-binding pseudobarrel domain
CDDcd100176.30E-136102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MEVMNKILSE SDAKNKRLEF PSRSLSAFPM PDGQNSVQFV AFDMNEQQWS LKVSIRNEGR  60
YPKPWLKGEW HDYVHQKGLK KGDKVILTMH EEENGERIYR IRAERKLFGF WYSIDDHQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048022.12e-84PREDICTED: uncharacterized protein LOC105142200
TrEMBLA0A3N7FPE72e-77A0A3N7FPE7_POPTR; Uncharacterized protein
STRINGPOPTR_0021s00500.11e-72(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1531737