PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG004973.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 118aa MW: 14151 Da PI: 8.8775

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG004973.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.2	9.2e-11	6	101	3	96
EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 k+l +++ k++rl +p + ++++ +g+ +s++ + d + ++W++k+++r+ ++ +l++ W ++v+++gLk gD v++++d+++++e + CCG004973.1 6 KIL-SESDAKNKRLEFPSRSLSAFpmpDGQ--NSVQFVAFDMQEQQWRLKVSIRNEGRYpkPWLKGEWHDYVHQKGLKKGDKVILTMDEEENGERIYR 100 555.455566778******999866444..677888889999***99888877889**********************998877765555 PP E CS B3 96 v 96 + CCG004973.1 101 I 101 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	9.009	3	105	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	7.0E-13	4	103	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.0E-9	5	94	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.10E-13	6	93	No hit	No description
Pfam	PF02362	2.4E-7	7	101	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MEVMNKILSE SDAKNKRLEF PSRSLSAFPM PDGQNSVQFV AFDMQEQQWR LKVSIRNEGR 60 YPKPWLKGEW HDYVHQKGLK KGDKVILTMD EEENGERIYR IRAERKHFGF WYSIDDQQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011048022.1	3e-79	PREDICTED: uncharacterized protein LOC105142200
TrEMBL	A0A3N7FPE9	3e-81	A0A3N7FPE9_POPTR; Uncharacterized protein
STRING	POPTR_0021s00530.1	1e-75	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15317	3	7