PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005063.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 27970.6 Da    PI: 8.4837
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005063.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.91.6e-291059251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 rien   rqvtfskRrng+lKKA ELSvLCdaevavi+fsstgklye+ss
  CCG005063.1 10 RIENLNSRQVTFSKRRNGLLKKARELSVLCDAEVAVIVFSSTGKLYEFSS 59
                 8***********************************************96 PP
2K-box69.11.4e-238817414100
        K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  + s + e++ +k+e+++L+ +  +++G++L+ Ls+keLq+Le+qL  ++ ++++kK+++l++q+++++++e+++  en++Lrk++ee
  CCG005063.1  88 EHSNSAEVNAVKDELSKLRLTCLQMMGQQLDGLSFKELQHLEHQLSAGILSVKDKKEQMLMDQLKKSKMQEQKAILENESLRKQIEE 174
                  446789******************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.347161IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-43160IPR002100Transcription factor, MADS-box
CDDcd002652.10E-42269No hitNo description
SuperFamilySSF554555.23E-33284IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.5E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-303859IPR002100Transcription factor, MADS-box
PfamPF014868.4E-1787172IPR002487Transcription factor, K-box
PROSITE profilePS5129712.53688178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRGKIEIRR IENLNSRQVT FSKRRNGLLK KARELSVLCD AEVAVIVFSS TGKLYEFSST  60
SMEHTLSRYG SGLDLDYNDH PSDDHGAEHS NSAEVNAVKD ELSKLRLTCL QMMGQQLDGL  120
SFKELQHLEH QLSAGILSVK DKKEQMLMDQ LKKSKMQEQK AILENESLRK QIEELKRGSR  180
PKSAFLELSP LDRRFAVASS KPDSNRKPQE EEDLSATSLH LGLSSDVCHR RKAAKIESVS  240
NDSGSQVASG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-22169169MEF2C
5f28_B4e-22169169MEF2C
5f28_C4e-22169169MEF2C
5f28_D4e-22169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048083.10.0PREDICTED: agamous-like MADS-box protein AGL18
SwissprotQ9M2K81e-68AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A2K1ZWX71e-177A0A2K1ZWX7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s04730.11e-155(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.14e-71AGAMOUS-like 18