PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG005156.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 200aa MW: 21388 Da PI: 9.7685

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG005156.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	88.2	1.9e-27	50	128	5	66
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................s 66 +++++++hTkv gR+RRvR++a++aar+F+L +eLG+ +d++tie Ll+ a+++i++ tgt s CCG005156.1 50 TSQSKDRHTKVHGRGRRVRIPALTAARVFQLPRELGHRSDGETIEGLLRHAEASIIASTGTgpipsipisttvgstpiS 128 5689*********************************************************555444444444332220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-23	52	144	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	21.721	53	107	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MASETVLYNF SSTSNTQHQQ PSPNSNNSVV PSPTTGGSQS KLTHLRKSTT SQSKDRHTKV 60 HGRGRRVRIP ALTAARVFQL PRELGHRSDG ETIEGLLRHA EASIIASTGT GPIPSIPIST 120 TVGSTPISSS SPSPSASCKV HPVNCIGPEM FSLLTAPSSR LDLDYRHMPF TALLLQPMAA 180 TVAVDAEEGR QQELTGEHKM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209228	0.0	AC209228.1 Populus trichocarpa clone POP075-L19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011013539.1	1e-144	PREDICTED: transcription factor PCF1-like
Swissprot	O23875	8e-30	PCF1_ORYSJ; Transcription factor PCF1
TrEMBL	B9N7J5	1e-126	B9N7J5_POPTR; Uncharacterized protein
STRING	POPTR_0016s11350.1	1e-126	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	3e-26	TCP family protein