PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG005208.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 125aa MW: 14826.3 Da PI: 10.8191

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG005208.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.4	1.3e-13	7	108	1	97
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE..TTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled..esgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.se 89 f k+l++ dv ++r+++p + ++ +gk sk ++ d +gr W+++++ rkk+ + v+t+GW e+v+ +gL+egD v F ++++ e CCG005208.1 7 FTKILSQTDV--KHRMTIPMESFNVVfqipQGK--HSKLFVFIDmiDTGRPWSFRCSTRKKDVHpkPVFTSGWIEYVRRKGLREGDQVSFFFVQKdGE 100 7888955555..5679***996669887555..45566777766799***98888887999*********************98866566 PP E..EEEEE CS B3 90 felvvkvf 97 + l+++v+ CCG005208.1 101 EGLRFGVH 108 66777775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-16	4	106	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.14E-15	4	99	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.841	5	111	IPR003340	B3 DNA binding domain
CDD	cd10017	7.47E-14	6	100	No hit	No description
Pfam	PF02362	3.4E-10	7	108	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0023	7	111	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MYPRLIFTKI LSQTDVKHRM TIPMESFNVV FQIPQGKHSK LFVFIDMIDT GRPWSFRCST 60 RKKDVHPKPV FTSGWIEYVR RKGLREGDQV SFFFVQKDGE EGLRFGVHAQ KKLRLWGKNC 120 WTTPF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216689	1e-169	AC216689.1 Populus trichocarpa clone POP101-J02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024455931.1	2e-52	uncharacterized protein LOC18098285
TrEMBL	A0A2K2AYF7	9e-76	A0A2K2AYF7_POPTR; Uncharacterized protein
STRING	POPTR_0004s22950.1	6e-78	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11016	3	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	3e-06	related to ABI3/VP1 1