PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG005209.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 123aa MW: 14731.2 Da PI: 10.6911

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG005209.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	34.2	4.6e-11	7	103	1	93
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEE..TTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEE.E-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltled..esgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFk.ldgrsef 90 f+k+l++ dv ++r+++p + ++ + +gk sk ++ d +gr W+++++ r+k+ v+++GW ++++++ L egD v F l+++ e+ CCG005209.1 7 FKKKLSRTDV--KHRMTIPMERFNVFqipQGK--HSKRFVFIDmiDTGRPWSFRCSTRRKDVYlkPVFSSGWIQYAREKCLSEGDQVSFFwLEKDGEE 100 5666644444..4579**999666887444..34455666655699***65555544666777****************99834444444 PP ..E CS B3 91 elv 93 l+ CCG005209.1 101 GLR 103 455 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.7E-14	3	100	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.12E-12	3	97	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	8.924	5	110	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.9E-7	6	104	IPR003340	B3 DNA binding domain
CDD	cd10017	4.69E-12	6	99	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MHPRLFFKKK LSRTDVKHRM TIPMERFNVF QIPQGKHSKR FVFIDMIDTG RPWSFRCSTR 60 RKDVYLKPVF SSGWIQYARE KCLSEGDQVS FFWLEKDGEE GLRLGVQAQK KLRLWGQDCW 120 ATV

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216689	1e-144	AC216689.1 Populus trichocarpa clone POP101-J02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024455931.1	2e-48	uncharacterized protein LOC18098285
TrEMBL	A0A2K2AYF7	2e-68	A0A2K2AYF7_POPTR; Uncharacterized protein
STRING	POPTR_0004s22950.1	2e-70	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11016	3	36