PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005210.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 124aa    MW: 14486.7 Da    PI: 9.5371
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005210.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.61.9e-127102192
                  EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                  f k+l++ dv   +r+ +p   ++ +   +gk+ e+++++ + ++g sW+++++ rkk+      vl++GW ++v+++gL egD v F  +++  e+ 
  CCG005210.1   7 FTKILSRTDVE--HRMAIPMGSFDVFqipQGKHSEQFDVIDMIKTGHSWRFQCSTRKKD-FypkPVLSSGWIDYVREKGLGEGDKVSFFWVQKdGEEG 101
                  77888555555..679****99977799988888888888888**********655555.348899**********************9775434444 PP

                  . CS
           B3  92 l 92 
                  l
  CCG005210.1 102 L 102
                  5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.59E-13497IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-144104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.9385110IPR003340B3 DNA binding domain
CDDcd100174.35E-16699No hitNo description
PfamPF023621.3E-97104IPR003340B3 DNA binding domain
SMARTSM010190.00547110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MYQRLIFTKI LSRTDVEHRM AIPMGSFDVF QIPQGKHSEQ FDVIDMIKTG HSWRFQCSTR  60
KKDFYPKPVL SSGWIDYVRE KGLGEGDKVS FFWVQKDGEE GLRLGVQAQK KLIRLLGKDC  120
WDTV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166891e-176AC216689.1 Populus trichocarpa clone POP101-J02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455931.11e-60uncharacterized protein LOC18098285
TrEMBLB9PC872e-75B9PC87_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22940.13e-76(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336