PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG005211.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 121aa MW: 14130.3 Da PI: 8.8462

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG005211.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.6	9.3e-13	6	86	3	86
EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 k+l +sdv ++ l lp +++++ g+ ++ l+++de+g +W++++++ ++ +r vl + W Fv+++gLk+gD++v+ +++ CCG005211.1 6 KKLNTSDVDRK--LLLPENCLKNLpRGQ---ETFLKIKDEDGIVWTFRCKIpPGGHSRPVLYGDWFLFVRQKGLKVGDIIVIVFNK 86 78888999887..9***996555444...456***********9976666679*******************998655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	9.46	2	106	IPR003340	B3 DNA binding domain
SMART	SM01019	0.009	4	96	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.5E-15	4	88	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.25E-14	5	90	No hit	No description
SuperFamily	SSF101936	2.88E-13	5	86	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.3E-10	6	86	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MEEVTKKLNT SDVDRKLLLP ENCLKNLPRG QETFLKIKDE DGIVWTFRCK IPPGGHSRPV 60 LYGDWFLFVR QKGLKVGDII VIVFNKQKAR AAADTSRDHF EIKQSNTEEF FYSLECPYKF 120 F

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011002452.1	1e-35	PREDICTED: double-stranded RNA-binding protein 3-like
TrEMBL	A0A2K2AYG3	6e-63	A0A2K2AYG3_POPTR; Uncharacterized protein
STRING	POPTR_0003s00430.1	4e-39	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13561	5	27