PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG005213.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 122aa MW: 13991.3 Da PI: 10.5204

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG005213.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.5	1.6e-15	6	102	1	95
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 f+k+l s + r+++p + ++++ +gk s+ ++ d +gr W+++++ rkk+ r vl++GW +Fvk+ LkegD v+F++ ++ + + CCG005213.1 6 FIKTL--SKTDIDYRMTIPMDSLSAFqipEGK--YSRAVVAFDITGRPWSFRCSTRKKDPRpkPVLSSGWIRFVKDRCLKEGDEVIFSVAHNdGAEGP 99 77888..555556679*****999655444..46789999*******9988888889***********************8877555555 PP EEE CS B3 93 vvk 95 ++ CCG005213.1 100 QFR 102 555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.3E-16	3	94	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.588	4	107	IPR003340	B3 DNA binding domain
CDD	cd10017	3.23E-17	4	88	No hit	No description
SuperFamily	SSF101936	9.61E-17	4	94	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	5.1E-4	6	109	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.8E-12	6	103	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MPKKVFIKTL SKTDIDYRMT IPMDSLSAFQ IPEGKYSRAV VAFDITGRPW SFRCSTRKKD 60 PRPKPVLSSG WIRFVKDRCL KEGDEVIFSV AHNDGAEGPQ FRIEARKKLA KLFGQDIWSN 120 PL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216689	1e-134	AC216689.1 Populus trichocarpa clone POP101-J02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028526.1	4e-86	PREDICTED: uncharacterized protein LOC105128509
TrEMBL	U5GKR7	1e-56	U5GKR7_POPTR; B3 family protein
STRING	POPTR_0004s22960.1	2e-57	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11016	3	36