PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG005217.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 116aa MW: 13563.3 Da PI: 7.7

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG005217.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.6	1.9e-12	5	95	1	89
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 f kvl s + +++rl++p + ++ +g+ +++ +d+ r+W ++l++ +++++ +t+ W +Fv+++gL++gD ++F++++ ++ CCG005217.1 5 FTKVL--SPTDTTHRLTIPAANLGDFefpMGE--HAIDIEATDTIQRQWIFRLSIrqDNNPNPrPAFTGQWIQFVNEKGLRVGDRIIFSRQQVEG 95 78999..88888899*****9999987655..45689999*******8877555444699*********************776544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.3E-17	2	95	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.16E-15	4	90	No hit	No description
SuperFamily	SSF101936	6.28E-14	4	93	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.5E-8	5	96	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MEQLFTKVLS PTDTTHRLTI PAANLGDFEF PMGEHAIDIE ATDTIQRQWI FRLSIRQDNN 60 PNPRPAFTGQ WIQFVNEKGL RVGDRIIFSR QQVEGNGVQY SIRAERRIFN YWVNVQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028527.1	1e-81	PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBL	A0A2K2AYH5	2e-75	A0A2K2AYH5_POPTR; Uncharacterized protein
STRING	POPTR_0004s23010.1	7e-76	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11016	3	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-07	related to ABI3/VP1 1