PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005218.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 115aa    MW: 13482.4 Da    PI: 8.8861
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005218.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.3e-127105398
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                  k+l  s +  + rl +p + ++++ +++ +++ + +e ++   ++W+++l++r++ +r    v+t+ W +Fv+++gLk+gD + +++++  +++++++
  CCG005218.1   7 KKL--SQTDIEYRLAFPTSSLRAFPMPE-GETAVYFEATDTleNEWNFRLSIRGGNDRytkPVITGDWLQFVRDKGLKVGDKIFLTREEGvNGERYRI 101
                  555..44444567999999999997664.55688888777777*******9977777766689***********************987768888887 PP

                  EEE- CS
           B3  95 kvfr 98 
                  k+ r
  CCG005218.1 102 KAER 105
                  7655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-13492IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00715104IPR003340B3 DNA binding domain
SuperFamilySSF1019365.23E-12692IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-15793No hitNo description
PfamPF023621.6E-816105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MEVLMEKKLS QTDIEYRLAF PTSSLRAFPM PEGETAVYFE ATDTLENEWN FRLSIRGGND  60
RYTKPVITGD WLQFVRDKGL KVGDKIFLTR EEGVNGERYR IKAERKIFKV WANVQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028527.17e-34PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBLA0A3N7G7536e-74A0A3N7G753_POPTR; Uncharacterized protein
STRINGPOPTR_0004s23040.14e-34(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11016336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.12e-07RAV family protein