PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG005358.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 123aa MW: 14232.5 Da PI: 9.0739

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG005358.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	66.4	4.5e-21	24	79	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++W+KYGqK +k+ r+Y+rC ++C++kk+ e s+ p+ + i+Yeg+H h CCG005358.1 24 EDGFEWKKYGQKFIKNIGKFRGYFRCQKRNCMAKKRAEWSS--PENLRIVYEGSHSHA 79 7************************************99..9***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-20	17	79	IPR003657	WRKY domain
PROSITE profile	PS50811	15.778	18	81	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-19	20	79	IPR003657	WRKY domain
SMART	SM00774	1.5E-19	23	80	IPR003657	WRKY domain
Pfam	PF03106	1.2E-19	24	78	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
TEEDKEEQQQ QHTDRGRRRL VLPEDGFEWK KYGQKFIKNI GKFRGYFRCQ KRNCMAKKRA 60 EWSSPENLRI VYEGSHSHAS STQDYSSASS QGTPPSSAAN QYNLYTQLFG NQPASSTHDQ 120 DHT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011048161.1	4e-90	PREDICTED: WRKY transcription factor 44-like isoform X1
TrEMBL	U5GSI9	4e-73	U5GSI9_POPTR; Uncharacterized protein
STRING	POPTR_0001s03970.1	7e-74	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18950	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	2e-11	WRKY DNA-binding protein 57