PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005422.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 357aa    MW: 38393.1 Da    PI: 8.5907
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005422.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.4e-091255445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     WT+e d+ + +a + ++ +    W++I + ++ g+t +++k+++ 
      CCG005422.1 12 WTKEQDKAFENALATYPEDtpdWWEKITADVP-GKTVEEIKHHYE 55
                     *******************9999*********.**********96 PP
2Myb_DNA-binding41.62.8e-13123167347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
      CCG005422.1 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 167
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.829762IPR017884SANT domain
SMARTSM007171.1E-7860IPR001005SANT/Myb domain
SuperFamilySSF466891.31E-101064IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-41155IPR009057Homeodomain-like
CDDcd001674.74E-81258No hitNo description
PfamPF002495.4E-71255IPR001005SANT/Myb domain
PROSITE profilePS5129417.581115172IPR017930Myb domain
SuperFamilySSF466891.72E-16118173IPR009057Homeodomain-like
SMARTSM007173.2E-10120170IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.4E-17120170IPR006447Myb domain, plants
CDDcd001671.34E-9123168No hitNo description
Gene3DG3DSA:1.10.10.601.8E-10123166IPR009057Homeodomain-like
PfamPF002493.5E-11123167IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSVDEGGSGS LWTKEQDKAF ENALATYPED TPDWWEKITA DVPGKTVEEI KHHYELLVED  60
ISQIEAGCVP LPNYSSSSEG STSHAIDEGT GKKGGGHVGH HNSDSNNGNK ASRSDQERRK  120
GIAWTEDEHR LFLLGLDKYG KGDWRSISRN FVVTRTPTQV ASHAQKYFIR LNSMNKDRRR  180
SSIHDITSVG NGDVAAPQGP ITGQTNGSAA GGSSGKAAKQ PPAQPVGPPG VGIYGPPTIG  240
QPIGGPLVSA VGTPVNLPAP AHMAYGVRAP VPGAVVPGAP MNMVPMTYPM PHTTTHRVLH  300
FSLNKVPCFC LSASKSSLMP FCLLGRHSQV SNKPRGEKNY IHLYRQQLWE NMAAFMG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-20777676RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175840.0AC217584.1 Populus trichocarpa clone POP021-G16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013556.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011013557.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011013558.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011013559.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011013560.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011013561.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011021984.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011021985.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011021986.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011021987.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011021988.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011021989.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-129SRM1_ARATH; Transcription factor SRM1
TrEMBLB9H5N10.0B9H5N1_POPTR; Uncharacterized protein
STRINGcassava4.1_012921m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-101MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]