PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005575.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 545aa    MW: 61138.8 Da    PI: 5.8806
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005575.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS415.83.8e-1271755451374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+++Ll+cA+avs+ d ++a  l+  l +++s +g+p+qRl ay++e+L+arl  s+s++y+al++++     ss+ ++++ ++++++P+ kf++  a
  CCG005575.1 175 LKHVLLACADAVSNADIQRAAGLMHVLDQMVSVSGEPIQRLGAYMLEGLRARLELSGSKIYRALKCEAPI---SSDLMTYMGILYQICPYWKFAYTSA 269
                  689******************************************************************9...9999999****************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N  I eave e r+HiiDf+i qG QW  L+q+La+Rp+gpp +RiTgv++++s   +   l  +g+rL+k A+e++vpfef+  va +  +++le+L
  CCG005575.1 270 NAVIQEAVEYEPRIHIIDFQIAQGSQWSVLMQKLACRPGGPPVIRITGVDDSQSAhaRGGGLDIVGQRLSKAAAECNVPFEFHD-VAMDGCEVQLEHL 366
                  ***************************************************9988889999***********************.6888999****** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  rv+pgEa++Vn+ + lh+++desv++ ++rd+++++vkslsP++v++veqe+++n+++F+ rf+e+l+yy+a+f+s++++ p+++++ri+ E+++++r
  CCG005575.1 367 RVQPGEAVVVNFPYVLHHMPDESVTTWNHRDRLIRMVKSLSPRIVTLVEQESNTNTKPFFPRFIETLDYYTAMFESIDVGRPKDDKQRINAEQHCVAR 464
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +ivn++ace+aer+erhe l+kWr+r+++aGF+++pls+++++ ++ ll++++ + y+v+e++ +l+l W++r + + SaWr
  CCG005575.1 465 DIVNMIACEEAERVERHELLAKWRSRFTMAGFNQYPLSSSVTTAVRDLLKEYD-RNYSVQERDWALYLRWRHRDMATSSAWR 545
                  *****************************************************.55*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.867149526IPR005202Transcription factor GRAS
PfamPF035141.3E-124175545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MQTSQKHRSA GIHRFYHQPV QEIDPYGLSH IQILNNMYSD GGSQGAAISF QTDQGEFFTL  60
ESSSATAGSI NYDSPAASVS SNRSPFSPQG SHSCISDPHH SPDTAYGSPL SGSSSADEDH  120
ILRQKLRELE ISLLGPESDI TDSGSFCFVS GGYQAESSAS WDWNQMMEVI PRLDLKHVLL  180
ACADAVSNAD IQRAAGLMHV LDQMVSVSGE PIQRLGAYML EGLRARLELS GSKIYRALKC  240
EAPISSDLMT YMGILYQICP YWKFAYTSAN AVIQEAVEYE PRIHIIDFQI AQGSQWSVLM  300
QKLACRPGGP PVIRITGVDD SQSAHARGGG LDIVGQRLSK AAAECNVPFE FHDVAMDGCE  360
VQLEHLRVQP GEAVVVNFPY VLHHMPDESV TTWNHRDRLI RMVKSLSPRI VTLVEQESNT  420
NTKPFFPRFI ETLDYYTAMF ESIDVGRPKD DKQRINAEQH CVARDIVNMI ACEEAERVER  480
HELLAKWRSR FTMAGFNQYP LSSSVTTAVR DLLKEYDRNY SVQERDWALY LRWRHRDMAT  540
SSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-531795458375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040189.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A1X9QM800.0A0A1X9QM80_9ROSI; Phytochrome A signal transduction 1
STRINGPOPTR_0016s01110.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13