PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005763.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 371aa    MW: 41899.7 Da    PI: 6.4352
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005763.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++++++G g+W+++++  g+ R++k+c++rw +yl
      CCG005763.1 14 KGLWSPEEDERLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding44.63.3e-1467112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E++l++ +++ lG++ W+ Ia+ ++ gRt++++k+ w++yl
      CCG005763.1  67 RGMFSQQEEDLIISLHEVLGNR-WAQIAAQLP-GRTDNEIKNLWNSYL 112
                      788*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.9E-25664IPR009057Homeodomain-like
PROSITE profilePS5129424.195965IPR017930Myb domain
SuperFamilySSF466891.12E-2812108IPR009057Homeodomain-like
SMARTSM007171.0E-111363IPR001005SANT/Myb domain
PfamPF002492.6E-141461IPR001005SANT/Myb domain
CDDcd001671.44E-101761No hitNo description
Gene3DG3DSA:1.10.10.607.0E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129419.38266116IPR017930Myb domain
SMARTSM007175.3E-1266114IPR001005SANT/Myb domain
PfamPF002491.9E-1367112IPR001005SANT/Myb domain
CDDcd001671.20E-970112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGRHSCCLKQ KLRKGLWSPE EDERLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNLWNS YLKKKLMKQG  120
IDPTTHKPLC QAGVKEEKDC TEKASFQIPQ SKGLPVVSNF TAQEPAFLIN DTSYNSSGLP  180
EVSREQFLNK QAYDPLSYFE FPAGIDLTGY NPSLSSVYHP TVRSLDQNQF ETSSNFGFTS  240
MPSLTSFDHG SMSGTDFSDN SASRMSSMFL NEAKESSSNS SNISNYAGYQ MNNMVDNAAA  300
FSSWDSDDHK LESVFQYHQV NGVKTEELKP SPWHEAGRLH THQNSVDFNS YPLTSLSEDI  360
TGANFDVFHQ I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28121165108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707850.0AB970785.1 Populus tremula x Populus tremuloides PtxtMYB148 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046215.10.0PREDICTED: protein ODORANT1-like
TrEMBLB9IEX50.0B9IEX5_POPTR; MYB family protein
STRINGPOPTR_0015s09430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.11e-82myb domain protein 50