PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005883.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 364aa    MW: 40528.4 Da    PI: 4.9259
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005883.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l  ++++ G+g+W++ ++  g+ R++k+c++rw +yl
      CCG005883.1 15 KGPWTPEEDQKLTAYIQLQGPGNWRSLPKNAGLQRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding54.52.7e-1768112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
      CCG005883.1  68 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 112
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2531062IPR017930Myb domain
SMARTSM007176.6E-131464IPR001005SANT/Myb domain
SuperFamilySSF466895.62E-3014109IPR009057Homeodomain-like
PfamPF002498.6E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-231669IPR009057Homeodomain-like
CDDcd001677.88E-111762No hitNo description
PROSITE profilePS5129425.25563117IPR017930Myb domain
SMARTSM007171.8E-1667115IPR001005SANT/Myb domain
PfamPF002491.2E-1568112IPR001005SANT/Myb domain
CDDcd001672.33E-1270113No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2670117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGRAPCCDKN GLMKKGPWTP EEDQKLTAYI QLQGPGNWRS LPKNAGLQRC GKSCRLRWTN  60
YLRPDIKRGR FSFEEEETII QLHSILGNKW SAIAARLPGR TDNEIKNYWN THIRKRLLRN  120
GIDPVTHASR LDLLDLSSIL SSALCNPSSL LTLSTLVGNT QALLNPDIFR LSTTLSSLKQ  180
ENSDLFFQQL QENQLCSSLL QNQAIPTLSS QPSQFQNLVE LIPACTPTTS TGPFLNETAP  240
LMLANVEGFS PNTTSTFSCQ NSQENFLPLD GGLVSQPNFY CNSTITTTNP TVPELEEYSG  300
FHSANNGYQN FSIDSVISTR LTSPDPLNSP STYVNSSSTE DDRECYSSLL KFEIPESLDI  360
DDFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-31121171105C-Myb DNA-Binding Domain
1msf_C3e-31121171105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048473.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9LDR82e-97MY102_ARATH; Transcription factor MYB102
TrEMBLB9I6H30.0B9I6H3_POPTR; Uncharacterized protein
STRINGPOPTR_0013s14480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85034127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.15e-88MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]