PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005887.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 243aa    MW: 28043.8 Da    PI: 4.9283
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005887.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEde+l  +++++G  +W+  ++  g+ R++k+c++rw +yl
      CCG005887.1 14 KGSWSVEEDEKLRVYIQKYGHWNWRQLPKFAGLSRCGKSCRLRWMNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding55.51.3e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++eEd l+++ +++lG++ W+ I+++++ gRt++++k++w++ 
      CCG005887.1  67 RGNFSEEEDNLIIQMHEELGNK-WSIISSKLP-GRTDNEIKNHWHTN 111
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.701961IPR017930Myb domain
SuperFamilySSF466893.1E-3111108IPR009057Homeodomain-like
SMARTSM007176.9E-121363IPR001005SANT/Myb domain
PfamPF002492.5E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-231568IPR009057Homeodomain-like
CDDcd001672.71E-91661No hitNo description
PROSITE profilePS5129427.26962116IPR017930Myb domain
SMARTSM007174.2E-1766114IPR001005SANT/Myb domain
PfamPF002493.8E-1667111IPR001005SANT/Myb domain
CDDcd001673.42E-1269112No hitNo description
Gene3DG3DSA:1.10.10.607.2E-2669116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVKSAYIDKN GHRKGSWSVE EDEKLRVYIQ KYGHWNWRQL PKFAGLSRCG KSCRLRWMNY  60
LRPDVKRGNF SEEEDNLIIQ MHEELGNKWS IISSKLPGRT DNEIKNHWHT NLSKRVKQNQ  120
PGSSEVMNKE QSSESSQSEV IQTKKSETDS VSVNTPSESD SQQKNVENFP SSQEISCSEF  180
SSMSNDSVSG MNSVAEDNFF SMEIFQDSGS DFWNLPFLAD NNYNQDGYES LFLTEEGYMS  240
FYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-281411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048477.10.0PREDICTED: transcription factor WER-like
TrEMBLA0A2K1Y5V71e-164A0A2K1Y5V7_POPTR; Uncharacterized protein
STRINGPOPTR_0013s14550.11e-150(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.17e-55myb domain protein 15