PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005888.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 256aa    MW: 29260.4 Da    PI: 4.4734
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005888.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.8e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l  +v+++G  +W+  ++  g+ R++k+c++rw++yl
      CCG005888.1 14 KGAWTPEEDRKLMAYVTRYGCWNWRQLPKFAGLQRCGKSCRLRWLNYL 61
                     79******************99************************97 PP
2Myb_DNA-binding543.7e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ ++eE+e ++ +++ lG++ W++Ia+ ++ gRt++++k++w++ 
      CCG005888.1  67 RGNYSKEEEETIISLHETLGNR-WSAIAAQLP-GRTDNEIKNHWHTN 111
                      899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-24564IPR009057Homeodomain-like
PROSITE profilePS5129415.805961IPR017930Myb domain
SuperFamilySSF466891.4E-2911108IPR009057Homeodomain-like
SMARTSM007174.2E-91363IPR001005SANT/Myb domain
PfamPF002498.2E-141461IPR001005SANT/Myb domain
CDDcd001671.30E-81661No hitNo description
PROSITE profilePS5129424.83362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2565116IPR009057Homeodomain-like
SMARTSM007171.5E-1666114IPR001005SANT/Myb domain
PfamPF002498.0E-1667111IPR001005SANT/Myb domain
CDDcd001679.93E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MVRTPCCDKT GLKKGAWTPE EDRKLMAYVT RYGCWNWRQL PKFAGLQRCG KSCRLRWLNY  60
LRPNIKRGNY SKEEEETIIS LHETLGNRWS AIAAQLPGRT DNEIKNHWHT NLKKRLRNKS  120
ALEAKEMSSD DDLSQNDKNQ EKDTEETDIS TQNPATSDKI IESPTSAMSP QASTSDISTI  180
DNVAASDWDL ISDNDFAFLE AYEAPSGNFW TEPFLSDDYF MPDDFMAPLV DPDSPFFDGE  240
ISSSFAFIDM EDCNLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048479.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLB9I6H81e-175B9I6H8_POPTR; Uncharacterized protein
STRINGPOPTR_0013s14560.11e-175(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-64myb domain protein 15