PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG005924.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 146aa MW: 16149.6 Da PI: 10.925

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG005924.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.3	4.8e-12	65	117	37	88
EEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 37 tledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 + d sgr+W++k+++ rk++ + v++kGW Fv ++ Lk+gD v F+ ++++ CCG005924.1 65 QAVDGSGRVWTFKCSIrRKGRPKPVISKGWLTFVASKSLKTGDKVQFSKEKNE 117 567899******884555555**********************955543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	1.69E-11	48	117	No hit	No description
SuperFamily	SSF101936	2.94E-10	56	116	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.0E-12	57	117	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.9E-9	65	117	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.825	68	131	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MAPGHTVHKT SVLSKRSFGH LVFDKWRDSQ RSSGGLILKR DSQCRPGFSA LFPPFNGGGY 60 AVDFQAVDGS GRVWTFKCSI RRKGRPKPVI SKGWLTFVAS KSLKTGDKVQ FSKEKNEAGA 120 KTHAYEIRAE KEIKIFGAVF GYAPII

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213428	1e-157	AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011006364.1	3e-54	PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBL	U7E1T2	9e-55	U7E1T2_POPTR; Uncharacterized protein
STRING	POPTR_0015s01750.1	1e-55	(Populus trichocarpa)
STRING	POPTR_0248s00220.1	1e-55	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2060	7	78