PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG006044.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 360aa MW: 38340.5 Da PI: 6.508

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG006044.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.8	2.7e-36	82	171	3	91
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 ++k+ ++++hTkv+gR+RRvR++a+caar+F+L++eLG+++d++ti WLl+ a+pai ++tgt++ +a ++ +++ + ++++ ++a CCG006044.1 82 AQKRNTKDRHTKVEGRGRRVRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIVAATGTGTVPAIAVsVNGTLKIPTESPATEAAD 171 689************************************************************777774432111111111111111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.7E-30	86	180	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.816	87	141	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MGSQNHHHTI EEIDQEHSIT VANVSNQPDR TTLQLKEETL TEPEGSRELE EHDNNVRRIN 60 NSSSNSCLVV HQVQRQQQVV MAQKRNTKDR HTKVEGRGRR VRMPATCAAR IFQLTRELGH 120 KSDGETIRWL LEHAEPAIVA ATGTGTVPAI AVSVNGTLKI PTESPATEAA DSDADGLVHK 180 KKRKRPCNSD FVDLTEAAHQ NSVSSGLAPI ASTSPQGLVP LWPMGTFVFP QGSSVGVGGS 240 NQAQFWAFPA TSTTPFFNMA ARPISSFVSA MQPGVQLAGN VSVDFGDAGG ELLGSGGSPP 300 NTIGSMSSSS SGSSAAAACG GGGGAQLLRD FSLEIYDKKE LQFFSHPVNH DHQQAPCSES

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MGSQNHHHTI EEIDQEHSIT VANVSNQPDR TTLQLKEETL TEPEGSRELE EHDNNVRRIN  60
NSSSNSCLVV HQVQRQQQVV MAQKRNTKDR HTKVEGRGRR VRMPATCAAR IFQLTRELGH  120
KSDGETIRWL LEHAEPAIVA ATGTGTVPAI AVSVNGTLKI PTESPATEAA DSDADGLVHK  180
KKRKRPCNSD FVDLTEAAHQ NSVSSGLAPI ASTSPQGLVP LWPMGTFVFP QGSSVGVGGS  240
NQAQFWAFPA TSTTPFFNMA ARPISSFVSA MQPGVQLAGN VSVDFGDAGG ELLGSGGSPP  300
NTIGSMSSSS SGSSAAAACG GGGGAQLLRD FSLEIYDKKE LQFFSHPVNH DHQQAPCSES

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00064	PBM	Transfer from AT5G51910	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011041616.1	0.0	PREDICTED: transcription factor TCP19-like
Swissprot	Q9LT89	5e-84	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A3N7G1I0	0.0	A0A3N7G1I0_POPTR; Uncharacterized protein
STRING	POPTR_0015s13660.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	3e-78	TCP family protein