PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006057.1
Common NameLOC105120059, LOC105137550
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 248aa    MW: 26945.1 Da    PI: 4.7726
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006057.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-1879129155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr++  +g+Wv+e+r+p   +k+ r++lg+f ta++Aa+a++ a+++l+g
  CCG006057.1  79 PVYRGVRRRN-SGKWVCEVREP---NKKSRIWLGTFPTADMAARAHDVAALALRG 129
                  68*****888.8******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.4E-1479129IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-2180139IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.3E-3280139IPR001471AP2/ERF domain
PROSITE profilePS5103222.65580137IPR001471AP2/ERF domain
SMARTSM003805.1E-3080143IPR001471AP2/ERF domain
PRINTSPR003679.0E-98192IPR001471AP2/ERF domain
CDDcd000183.03E-3181139No hitNo description
PRINTSPR003679.0E-9103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDVFCSYSDQ NPIGSMNLMS VHDEQECSYS SVLSDSSITS SVTKGVQPGA IFSDEEVILA  60
SRNPKKRAGR KKFRETRHPV YRGVRRRNSG KWVCEVREPN KKSRIWLGTF PTADMAARAH  120
DVAALALRGR SACLNFADSA WRLPTPASSD AKDIQKAAAE AAEAFRPEGS LGVELTRAGD  180
EVDQVAGTAA GDVFYMDDDA DFGMPGLLAN IAEGMLLPPP NYCGYSGGDS LDNMENNDTE  240
MSLWSFSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-14781361271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC3457500.0KC345750.1 Populus euphratica C-repeat binding factor 4a mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016548.10.0PREDICTED: dehydration-responsive element-binding protein 1A-like isoform X1
RefseqXP_011041633.10.0PREDICTED: dehydration-responsive element-binding protein 1A-like
SwissprotQ9FJ937e-76DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLV9PCC30.0V9PCC3_POPEU; C-repeat binding factor 4a
STRINGPOPTR_0015s13830.11e-164(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-60C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]