PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG006058.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 250aa MW: 26726.9 Da PI: 6.6907

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG006058.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.6	4.7e-16	84	132	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +kGVr + +g+Wv+eIr+p++ ++r++lg++ t+e+Aa a++ a+++l+g CCG006058.1 84 SFKGVRLR--SGKWVSEIREPRK---TTRVWLGTYPTPEMAATAYDVAALALKG 132 69*986..5*****843...5**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.8E-10	83	132	IPR001471	AP2/ERF domain
CDD	cd00018	2.59E-27	83	142	No hit	No description
PROSITE profile	PS51032	19.388	84	140	IPR001471	AP2/ERF domain
SMART	SM00380	1.6E-27	84	146	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.5E-25	84	142	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.5E-17	85	142	IPR016177	DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MANPKPQADQ LPPLHSPILI PSPNRSSGQP FSSRHDEHSP RLIRLPIGIS SQPMSGRHGD 60 QSPRRPIRSL GGSSAQPASG RHPSFKGVRL RSGKWVSEIR EPRKTTRVWL GTYPTPEMAA 120 TAYDVAALAL KGTNTPLNFP ESILSYPIPA SASPSDIRAA AASAASARSP KLESGPNPEM 180 GQPETESSSS IITTDVQSGQ EIFDEEEFLN MPNLLVDMAG GMLVSPPRIN TLSSDDSPGS 240 SDAESLWSYP

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF155936	0.0	EF155936.1 Populus trichocarpa TINY-like protein (TINYL17) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011041634.1	1e-179	PREDICTED: ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	4e-46	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	B9ID12	1e-147	B9ID12_POPTR; Uncharacterized protein
STRING	POPTR_0015s13840.1	1e-148	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF562	32	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	1e-35	ERF family protein

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]