PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006213.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 148aa    MW: 16487.8 Da    PI: 7.006
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006213.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.91.1e-4164140278
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  Cq+++C+ad+++ak+yh+rhkvCe+h+ka++v+v+g++qrfCqqCsrfh+lsefD++krsCr rLa+hnerrrk+++
  CCG006213.1  64 CQAKNCTADMTDAKRYHKRHKVCEFHAKASSVIVNGVQQRFCQQCSRFHDLSEFDDSKRSCRMRLAGHNERRRKSSS 140
                  **************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375759.0E-561148IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.101.9E-3358125IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.30861138IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.69E-3862141IPR004333Transcription factor, SBP-box
PfamPF031104.3E-3264137IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MGTSKAEGKR NLNEIEDEEE DDDEEDVYTG LGFGDDDNTK KKGRKGSAYD GGSGRSSSGP  60
PISCQAKNCT ADMTDAKRYH KRHKVCEFHA KASSVIVNGV QQRFCQQCSR FHDLSEFDDS  120
KRSCRMRLAG HNERRRKSSS DNQGEGSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-3851137184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00290DAPTransfer from AT2G33810Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027797.11e-106PREDICTED: squamosa promoter-binding-like protein 3 isoform X1
SwissprotQ387413e-46SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLB9H2S43e-71B9H2S4_POPTR; Squamosa promoter-binding-like protein
STRINGPOPTR_0004s04630.15e-72(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-42squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]