PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006288.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 531aa    MW: 59259.4 Da    PI: 10.3106
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006288.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.2e-07943338
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                      W t+E++ll  av ++G+++W+++a+++   Rt +
      CCG006288.1  9 QWGTWEELLLGGAVMRHGTRDWNLVASELR-ARTVN 43
                     6****************************9.99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002493.2E-6943IPR001005SANT/Myb domain
CDDcd001670.004251043No hitNo description
SMARTSM002971.7E-14293397IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.8E-14299394IPR001487Bromodomain
SuperFamilySSF473704.19E-17300397IPR001487Bromodomain
PfamPF004399.2E-11303381IPR001487Bromodomain
PROSITE profilePS5001410.07308378IPR001487Bromodomain
CDDcd043695.92E-7310390No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MGTEILIKQW GTWEELLLGG AVMRHGTRDW NLVASELRAR TVNCPYTFTP EWYSHDLARL  60
ENVNGDYDND VSRDVHICKA KYEDLQQRYS GCKAWFEELR KKRMAELRRA LEQSEGSIGS  120
LESKLEILKA EKREDCHVSY DSSQTESPVL FRKCDGIESS SKETSKDGLS AGSFTQDTKT  180
NWTPECRVAT AMLAAEMEIK PEVSISPEEN KVSSIWKLSE SIFAGQVSSL KRRRGKRKRK  240
DCSKDVKEGS VGESEFLGSA DALFATRCKD NSTSTSGQIA RCSTVDDQSR GSSKDGAVDV  300
RVIFDSIAEN KCACVFHRRL DSQKRGRYKK MILQHMDIDT IRSRIASGSI TTAKEIFRDL  360
LLLANNALVF YSKTTREYKS ALLLRDIVTK SLQQNLKNYI TKTTITFLST TSPLLNPPVK  420
PQSARPGNGK LSGKVTKAGK LVAKTPNTGK RPNNVHSPPS AESSALKKKG SHPPLLAESL  480
AMRKKSSHSF PSAESLATRK KGFGRPRKTG QESATQRFES LPKGRKRSRV K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229236LKRRRGKR
2231237RRRGKRK
3232240RRGKRKRKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027921.10.0PREDICTED: uncharacterized protein LOC105128097
TrEMBLA0A2K2APF90.0A0A2K2APF9_POPTR; Uncharacterized protein
STRINGPOPTR_0004s03710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63041723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.19e-31DNA-binding bromodomain-containing protein