PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006318.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRF
Protein Properties Length: 456aa    MW: 51488 Da    PI: 9.1855
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006318.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.27.7e-2577120144
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                  d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e
  CCG006318.1  77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 120
                  79***************************************997 PP
2QLQ59.41e-20842236
          QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                 +FTa+Q+q+L++Q+l+yKy++++ P+Pp+Ll+ i+
  CCG006318.1  8 PFTASQWQELEHQALIYKYMVSGIPIPPDLLFTIK 42
                 8******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.1E-12743IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.741843IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.4E-15841IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.88877121IPR014977WRC domain
PfamPF088792.6E-2078120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MSGGNRFPFT ASQWQELEHQ ALIYKYMVSG IPIPPDLLFT IKRSGCLDSS LSSKLFPRQP  60
PHFSWSCFQM GLGRKIDPEP GRCRRTDGKK WRCSKEAYPD SKYCEKHMHR GKNRSRKPVE  120
VATQSTTAPT VSSITRNHSN NSLLTTSPHS LSLLSPETHH QNHLHYPAPA GYHAHPNHQF  180
LSSSRPLGIG LSPHENPTHL LLDSGGSSLA NTDYRRNRNV YGLKEEVDEH AFFLEPSGSM  240
RSLSGSSLDD AWQLTPLTMN SSPSTTNSSK QRSLSSLHNE YSYLQLQSLS DHDTPKQQKQ  300
YQHNYLLGSS DLDSLGPIKM EKEKSQKTVH RFFDEGPPKD KDSWLDLDDK SSKSASVSAT  360
GLSISIPSSH DFLPIFSSRT NNGNQFNLLR LFFGVDIYLP LIFVDFLFER DKYFLSMKLN  420
HFVLQMVDFT LVGFWPKMYL VGVGGSPPSV KRPHNC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826621e-148AC182662.2 Populus trichocarpa clone Pop1-15O24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045983.10.0PREDICTED: growth-regulating factor 1 isoform X2
TrEMBLA0A2K2A2B40.0A0A2K2A2B4_POPTR; Uncharacterized protein
STRINGPOPTR_0006s14560.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-56growth-regulating factor 5