PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006406.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 316aa    MW: 35943.4 Da    PI: 6.7159
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006406.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.7e-181360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd llv+++ ++G g+W++ a++ g++Rt+k+c++rw++yl
      CCG006406.1 13 RGPWTLEEDTLLVHYIGRHGEGRWNLLAKRAGLRRTGKSCRLRWLNYL 60
                     89********************************************97 PP
2Myb_DNA-binding53.36.5e-1766109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
      CCG006406.1  66 RGNLTPQEQLLILDLHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 109
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.28860IPR017930Myb domain
SuperFamilySSF466891.76E-3011107IPR009057Homeodomain-like
SMARTSM007173.6E-151262IPR001005SANT/Myb domain
PfamPF002498.8E-171360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-221467IPR009057Homeodomain-like
CDDcd001671.08E-111560No hitNo description
PROSITE patternPS0017502837IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.14861115IPR017930Myb domain
SMARTSM007174.7E-1565113IPR001005SANT/Myb domain
PfamPF002491.7E-1566109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2368114IPR009057Homeodomain-like
CDDcd001671.28E-1170109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MTGSKEDGSE LRRGPWTLEE DTLLVHYIGR HGEGRWNLLA KRAGLRRTGK SCRLRWLNYL  60
KPDVKRGNLT PQEQLLILDL HSKWGNRWSK IAQHLPGRTD NEIKNYWRTR VQKQARHLKI  120
DANSTAFQNI IRWFWMPRLL QKIGGSSTSS SAMPSQRPAV SQPNLIYAPQ LSTFPPALPP  180
VQQQEAPLDM SVTMHCLEPH EQTSDSELGT SSCISSAESM NVSQMSQLSE YPTSNFQAMG  240
SSSEYSTLVK GCYYVDSNCY DMEAINLATM PVPGELGISA GDRHIEDGDW GEYDFGDTMW  300
NMDELWQFRN LQGREN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-25101141104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011974.10.0PREDICTED: myb-related protein Myb4-like
RefseqXP_011013824.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLB9IE450.0B9IE45_POPTR; Uncharacterized protein
STRINGPOPTR_0015s03770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.19e-83myb domain protein 116