PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006673.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 402aa    MW: 44648.4 Da    PI: 6.9749
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006673.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.75.5e-29104161260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +Dgy+WrKYGqK v+g+ef rsYY+Ct+++C+vkk++e+s+ d+k+ +i+Y geH+h+k
  CCG006673.2 104 EDGYRWRKYGQKLVRGNEFIRSYYKCTHPSCQVKKQLECSH-DGKLADIVYIGEHEHPK 161
                  7***************************************9.***************85 PP
2WRKY103.31.4e-32270328159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dgy+WrKYGqK vkg+++prsYYrC+s gCpvkk+ver+ +dpk+v++ Yeg+H+h+
  CCG006673.2 270 VNDGYRWRKYGQKLVKGNPNPRSYYRCSSLGCPVKKHVERAYHDPKLVITSYEGQHDHD 328
                  58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.2498162IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-2598162IPR003657WRKY domain
SuperFamilySSF1182903.79E-2399162IPR003657WRKY domain
SMARTSM007749.2E-32103161IPR003657WRKY domain
PfamPF031063.6E-22104160IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-33257330IPR003657WRKY domain
SuperFamilySSF1182901.57E-28262330IPR003657WRKY domain
PROSITE profilePS5081134.624265330IPR003657WRKY domain
SMARTSM007742.9E-37270329IPR003657WRKY domain
PfamPF031063.3E-25271327IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MVSSEEVSPK ELQKRQSLDG GTDTAQQTRG SGGDASQQEG IPPSNAPEKP LENTGGRILQ  60
LDKEGSVSSL TPRKLSHTPG SDLHSLQSGQ ERWSPSIMRE KVSEDGYRWR KYGQKLVRGN  120
EFIRSYYKCT HPSCQVKKQL ECSHDGKLAD IVYIGEHEHP KPQLNLPKAV GCDLSIVEEK  180
PDNLLLTAVE ESQAPNPIEP TTTSQISTVT SSEYVKRVLS EPNRIRDEID DDQRSKQRKK  240
RNCNDDSTPL DKPTGEPHLV IQTKCEVDTV NDGYRWRKYG QKLVKGNPNP RSYYRCSSLG  300
CPVKKHVERA YHDPKLVITS YEGQHDHDMP PSRTVPQNTT GLNTCTTTIQ NGVSGRSTEQ  360
HAGESRTESK EESAACGVRT ITPGPESSPN EQHTLNSEPA LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-34102331375WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774220.0GQ377422.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048957.10.0PREDICTED: WRKY transcription factor 1
RefseqXP_011048958.10.0PREDICTED: WRKY transcription factor 1
RefseqXP_011048960.10.0PREDICTED: WRKY transcription factor 1
SwissprotQ9SI375e-78WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A2K2BMP00.0A0A2K2BMP0_POPTR; Uncharacterized protein
STRINGPOPTR_0014s16220.20.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.27e-81zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]