PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG006990.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 161aa    MW: 17758.5 Da    PI: 10.2188
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG006990.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.13.3e-202660135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C+ C+ttkTplWR gp g+k+LCnaCG++yrkk++
  CCG006990.1 26 CTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKKRS 60
                 *********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.5712056IPR000679Zinc finger, GATA-type
SMARTSM004013.2E-152071IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.28E-142369No hitNo description
Gene3DG3DSA:3.30.50.101.7E-162459IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.60E-132570No hitNo description
PfamPF003203.8E-182660IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402651IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MDLKGRKSSR EEESCGSGDV EDKKACTDCK TTKTPLWRGG PAGPKSLCNA CGIRYRKKRS  60
VMRLEKCPEK KREKTTPSNT TTATDISTIT TATTTNTAQV VSGNGLISES LRMSLMVLGE  120
EMMLQRPSVV KKQRCQRKRK LREEEQAAFS LMALSCGSVF A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036926.11e-114PREDICTED: GATA transcription factor 16-like
TrEMBLB9N4N62e-86B9N4N6_POPTR; Uncharacterized protein
STRINGPOPTR_0005s02040.13e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-16GATA transcription factor 15