PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG007032.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 1045aa MW: 116398 Da PI: 7.0425

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG007032.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28	5.2e-09	5	40	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W +eE e++++a +++G++ W+++a+ + +R+ +++ CCG007032.1 5 QWGKEELERFYKAYRKHGKD-WEKVASAVR-NRSVEMV 40 6***************99.*****.98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	12.387	1	52	IPR017884	SANT domain
SMART	SM00717	1.4E-5	2	50	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.57E-9	4	51	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-4	5	40	IPR009057	Homeodomain-like
Pfam	PF00249	9.9E-8	5	40	IPR001005	SANT/Myb domain
CDD	cd00167	5.42E-6	6	48	No hit	No description
Pfam	PF06584	3.6E-32	577	677	IPR033471	DIRP domain
SMART	SM01135	8.5E-54	577	678	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1045 aa Download sequence Send to blast
MLGPQWGKEE LERFYKAYRK HGKDWEKVAS AVRNRSVEMV EALYTMNKAY LSLPKGFASA 60 AGLIAMMTDH YSNLGESESE IESNGGTGTS QKSQKHARVT KGSDAPPVPD LLQSQPASNY 120 GCLSMLKKRR TGSKPWAVGK RTPRVPVTYS FDKYSEEKYF SPIQQGLKVK ADAVDDDVAH 180 EIALALTEAS QRGGSPQVSQ TPKRKTKMPS HAQHDEQMHA EAEMMSAKLR GSEMEEVGCE 240 LSLGSTEADV VDYVKDESFW KGKRYYGRRP PAEDLDDNLD DVREACSGTE EGQKLDAVKE 300 LFEMEVADTK LVRSSKGSRK RSKKVLFGEV EDADFDALEA LADLSLRLPE TPVDTGSSVY 360 VEEEKTGIVA KSKLKGNPSS SGVKPISFKT TKQGKVFTDN ASSIPEEKDA AHQFGPVMRK 420 RRQKHLPSKI SENEEHADSY LGESQKVEVT TDDNNFMSKG KRSQYAAHSK QGKLMKPAER 480 TSSSNNHGRE LNNSARTTIQ VLSASQFNLP TKVRSSRKLN TPKMLVERDS KSSENIVNSQ 540 SNTLIPSFQD RVLGLKGKLS NCLSRYLVRR WCVFEWFYSA IDYPWFSKRE FVEYLEHVRL 600 GHIPRLTRVE WGVIRSSLGK PRRFSEQFLK EEKEKLNHYR ESVREHYAEL RTGTREGLPT 660 DLARPLSVGQ RIIALHPRTS EIQDGSILTV DHSRCHVQFD RPELGVEFVM DVDCMPSNPS 720 ENMPASMIGH NIVLNRYMKN LNELKISGQP AEKKMEGFQF SPCENLEDHS ALPHASLSTY 780 HCSVLLQQPM GGLGGSNTQV NNGGETVNTQ QATNAQPLFC AQIQAKEADI HALSELTRAL 840 DKKEAVVSEL KHMNDEVLES QKRGENSLKD SEAFKKHYAA VLLQLNEVNE QAMSSLKKEG 900 SCIESIEDAI DFVNNKLLAD DSSVPAIRSP VPEGSVQDTP ASQDQLSSCV GNPGAINHAP 960 DAKWNNLSNE NEVQIPSELI SHCVATLLMI QKCTERQFPP SHVAQVLDSA VTSLKPCCSV 1020 NLPVYAEIQK FMGIIKNQIL ALIPT

Sequence ? help Back to Top

Protein Sequence Length: 1045 aa Download sequence Send to blast

MLGPQWGKEE LERFYKAYRK HGKDWEKVAS AVRNRSVEMV EALYTMNKAY LSLPKGFASA  60
AGLIAMMTDH YSNLGESESE IESNGGTGTS QKSQKHARVT KGSDAPPVPD LLQSQPASNY  120
GCLSMLKKRR TGSKPWAVGK RTPRVPVTYS FDKYSEEKYF SPIQQGLKVK ADAVDDDVAH  180
EIALALTEAS QRGGSPQVSQ TPKRKTKMPS HAQHDEQMHA EAEMMSAKLR GSEMEEVGCE  240
LSLGSTEADV VDYVKDESFW KGKRYYGRRP PAEDLDDNLD DVREACSGTE EGQKLDAVKE  300
LFEMEVADTK LVRSSKGSRK RSKKVLFGEV EDADFDALEA LADLSLRLPE TPVDTGSSVY  360
VEEEKTGIVA KSKLKGNPSS SGVKPISFKT TKQGKVFTDN ASSIPEEKDA AHQFGPVMRK  420
RRQKHLPSKI SENEEHADSY LGESQKVEVT TDDNNFMSKG KRSQYAAHSK QGKLMKPAER  480
TSSSNNHGRE LNNSARTTIQ VLSASQFNLP TKVRSSRKLN TPKMLVERDS KSSENIVNSQ  540
SNTLIPSFQD RVLGLKGKLS NCLSRYLVRR WCVFEWFYSA IDYPWFSKRE FVEYLEHVRL  600
GHIPRLTRVE WGVIRSSLGK PRRFSEQFLK EEKEKLNHYR ESVREHYAEL RTGTREGLPT  660
DLARPLSVGQ RIIALHPRTS EIQDGSILTV DHSRCHVQFD RPELGVEFVM DVDCMPSNPS  720
ENMPASMIGH NIVLNRYMKN LNELKISGQP AEKKMEGFQF SPCENLEDHS ALPHASLSTY  780
HCSVLLQQPM GGLGGSNTQV NNGGETVNTQ QATNAQPLFC AQIQAKEADI HALSELTRAL  840
DKKEAVVSEL KHMNDEVLES QKRGENSLKD SEAFKKHYAA VLLQLNEVNE QAMSSLKKEG  900
SCIESIEDAI DFVNNKLLAD DSSVPAIRSP VPEGSVQDTP ASQDQLSSCV GNPGAINHAP  960
DAKWNNLSNE NEVQIPSELI SHCVATLLMI QKCTERQFPP SHVAQVLDSA VTSLKPCCSV  1020
NLPVYAEIQK FMGIIKNQIL ALIPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	417	422	MRKRRQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011043234.1	0.0	PREDICTED: protein ALWAYS EARLY 3-like isoform X1
Refseq	XP_011043236.1	0.0	PREDICTED: protein ALWAYS EARLY 3-like isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A2K1ZL81	0.0	A0A2K1ZL81_POPTR; Uncharacterized protein
STRING	POPTR_0008s22660.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]