PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007084.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 308aa    MW: 35462.4 Da    PI: 4.9729
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007084.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.4e-141562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W+++Ed++l  ++k++G  +W+  ++  g+ R++k+c++rw +yl
      CCG007084.1 15 RGTWSADEDQKLRAYIKRYGIWNWNEMPKAAGLLRSGKSCRLRWMNYL 62
                     89******************99**********99************97 PP
2Myb_DNA-binding51.81.9e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ ++eE + ++++++ lG++ W+tIa++++ gRt++++k++w++yl
      CCG007084.1  68 RGNLSKEEVQTIIKLHEILGNR-WSTIAAKLP-GRTDNEIKNFWNTYL 113
                      7899******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.7791062IPR017930Myb domain
SuperFamilySSF466894.3E-2713109IPR009057Homeodomain-like
SMARTSM007172.8E-111464IPR001005SANT/Myb domain
PfamPF002493.2E-121562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-201669IPR009057Homeodomain-like
CDDcd001677.70E-91762No hitNo description
PROSITE profilePS5129423.38163117IPR017930Myb domain
SMARTSM007172.9E-1567115IPR001005SANT/Myb domain
PfamPF002491.4E-1468113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-2470116IPR009057Homeodomain-like
CDDcd001675.20E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MRGISQNYQN VCLKRGTWSA DEDQKLRAYI KRYGIWNWNE MPKAAGLLRS GKSCRLRWMN  60
YLRPGIKRGN LSKEEVQTII KLHEILGNRW STIAAKLPGR TDNEIKNFWN TYLRNRFNNN  120
ISNTSVQAPK LQGTSPVNDI NENQHMEENV GSLQSSGEPS FWDQPFSMEA QVCKVEDYGE  180
AYTDEMWVQE LMYHPNASHN FECKERNSSD IDVSLPPSPN ILNSEEYSSS GTLPMSPIIS  240
TDNFSSSSSN PVNDFNENQH MVEIGSLGSF GELSLWDHRF SMEAQLCKVE DYGETYTDQM  300
WVQELLHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24131185109B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043327.10.0PREDICTED: transcription factor MYB3-like
TrEMBLB9HYP40.0B9HYP4_POPTR; Uncharacterized protein
STRINGPOPTR_0011s04020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15840411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.17e-50myb domain protein 15