PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007086.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 215aa    MW: 24656 Da    PI: 10.3923
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007086.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-163986148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W ++Ed++l  ++k++G+++W+ +++  g+ R++k+c+ rw +yl
      CCG007086.1 39 KGAWDPDEDQILRAYIKRYGTRNWNEVPKAAGLLRSGKSCRFRWMNYL 86
                     79******************************99************97 PP
2Myb_DNA-binding52.61.1e-1692137148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE + +++++++lG+  W++Ia++++ gRt++++k++w+++l
      CCG007086.1  92 RGNFSKEEVQTIIKLHEMLGNS-WSAIAEKLP-GRTDNDIKNFWNTHL 137
                      89******************99.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2393486IPR017930Myb domain
SuperFamilySSF466894.49E-2837133IPR009057Homeodomain-like
SMARTSM007171.6E-133888IPR001005SANT/Myb domain
PfamPF002494.4E-153986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-224093IPR009057Homeodomain-like
CDDcd001671.20E-104186No hitNo description
PROSITE profilePS5129424.91187141IPR017930Myb domain
SMARTSM007178.0E-1791139IPR001005SANT/Myb domain
PfamPF002497.2E-1692137IPR001005SANT/Myb domain
CDDcd001672.98E-1294137No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2694139IPR009057Homeodomain-like
Gene3DG3DSA:3.30.870.207.5E-4140201IPR027415Tyrosyl-DNA phosphodiesterase C-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MTHTAVGIFK VKDMKSRNGV SRPEMMSISQ KYQNLCLKKG AWDPDEDQIL RAYIKRYGTR  60
NWNEVPKAAG LLRSGKSCRF RWMNYLRPDI KRGNFSKEEV QTIIKLHEML GNSWSAIAEK  120
LPGRTDNDIK NFWNTHLRKS FNNNISNTAV QAPKLEGTQT SEEESKQRKS SNIIDVSFPT  180
APKILNSEDQ YSSKGTLHMS PIRSTDNSHH QVPVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-263014118128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317256.31e-149transcription factor MYB14
TrEMBLA0A2K1R5C91e-148A0A2K1R5C9_POPTR; Uncharacterized protein
STRINGPOPTR_0011s04000.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15840411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-54myb domain protein 4