PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007114.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28630.7 Da    PI: 7.5385
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007114.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.71.2e-261059251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 rien   rqvtf+kRr g++KK +ELSvLCdae+ +iifss+gklye+++
  CCG007114.1 10 RIENRAARQVTFAKRRGGLFKKTHELSVLCDAEIGLIIFSSNGKLYEFCN 59
                 8***********************************************95 PP
2K-box64.15.3e-2280167996
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                   e++++e+ ++e+++++ke++ Lq + R ++Ge+L+sL ++ L +Le+qLe s++k+R++K ell +q+++l++k k+l+een++++ 
  CCG007114.1  80 PESNDWEQIEKESKRIRKETDDLQLSVRCYKGENLSSLHHEGLVELEKQLECSVNKVRAQKLELLQQQVDNLRRKGKMLEEENQQIQY 167
                  56788999****************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.235161IPR002100Transcription factor, MADS-box
CDDcd002656.10E-38272No hitNo description
SuperFamilySSF554552.35E-28276IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-1981168IPR002487Transcription factor, K-box
PROSITE profilePS5129713.86285181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGKIAITR IENRAARQVT FAKRRGGLFK KTHELSVLCD AEIGLIIFSS NGKLYEFCNE  60
SSSIPHIIRR YEISKGMRVP ESNDWEQIEK ESKRIRKETD DLQLSVRCYK GENLSSLHHE  120
GLVELEKQLE CSVNKVRAQK LELLQQQVDN LRRKGKMLEE ENQQIQYHLH HVAMLEQQQA  180
AAAMVKPMEQ QRMLEQFQFS DEDQPISSLL QLAPLPPQFQ PYRVQPTQPN LQDFSLSIPD  240
PCNYIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-18171169MEF2C
5f28_B8e-18171169MEF2C
5f28_C8e-18171169MEF2C
5f28_D8e-18171169MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150156LRRKGKM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029935.10.0PREDICTED: MADS-box protein FBP24-like isoform X1
RefseqXP_011029937.10.0PREDICTED: MADS-box protein FBP24-like isoform X1
RefseqXP_011029938.10.0PREDICTED: MADS-box protein FBP24-like isoform X1
TrEMBLB9I4N61e-175B9I4N6_POPTR; Uncharacterized protein
STRINGPOPTR_0012s14770.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.22e-58MIKC_MADS family protein