PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG007170.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

M-type_MADS

Protein Properties

Length: 61aa MW: 6957.17 Da PI: 10.2841

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG007170.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.3	6.6e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rienk+ rqvtfskRrng+lKKA+ELS LCdaeva+iifss+gkl+e+ss CCG007170.1 9 ERIENKISRQVTFSKRRNGLLKKAYELSLLCDAEVALIIFSSHGKLFEFSS 59 69***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.328	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.3E-38	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.62E-29	2	59	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.97E-35	2	59	No hit	No description
PRINTS	PR00404	4.0E-31	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-31	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-31	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 61 aa Download sequence Send to blast
MGRGKVVLER IENKISRQVT FSKRRNGLLK KAYELSLLCD AEVALIIFSS HGKLFEFSSI 60 E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	7e-21	1	61	1	61	MEF2C
5f28_B	7e-21	1	61	1	61	MEF2C
5f28_C	7e-21	1	61	1	61	MEF2C
5f28_D	7e-21	1	61	1	61	MEF2C
6byy_A	7e-21	1	61	1	61	MEF2 CHIMERA
6byy_B	7e-21	1	61	1	61	MEF2 CHIMERA
6byy_C	7e-21	1	61	1	61	MEF2 CHIMERA
6byy_D	7e-21	1	61	1	61	MEF2 CHIMERA
6bz1_A	8e-21	1	61	1	61	MEF2 CHIMERA
6bz1_B	8e-21	1	61	1	61	MEF2 CHIMERA
6bz1_C	8e-21	1	61	1	61	MEF2 CHIMERA
6bz1_D	8e-21	1	61	1	61	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.
UniProt	Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269\|PubMed:16217607, ECO:0000269\|PubMed:9085264, ECO:0000269\|Ref.8}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006377087.1	7e-35	truncated transcription factor CAULIFLOWER A isoform X1
Refseq	XP_011030020.1	6e-35	PREDICTED: truncated transcription factor CAULIFLOWER A-like
Refseq	XP_011030021.1	6e-35	PREDICTED: truncated transcription factor CAULIFLOWER A-like
Refseq	XP_024437762.1	5e-35	truncated transcription factor CAULIFLOWER A isoform X2
Swissprot	A2Y9P0	7e-30	MADS5_ORYSI; MADS-box transcription factor 5
Swissprot	Q0DEB8	7e-30	MADS5_ORYSJ; MADS-box transcription factor 5
TrEMBL	U5FXL4	2e-33	U5FXL4_POPTR; Uncharacterized protein
STRING	POPTR_0015s14010.1	8e-32	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	8e-32	AGAMOUS-like 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cui R, et al. Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa). Plant J., 2010. 61(5): p. 767-81 [PMID:20003164]