PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG007181.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 154aa MW: 17208.5 Da PI: 6.9888

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG007181.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.2	4.4e-41	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+C++dC+++pyfp+++p++fa+vh+++Gasnv k+l++lp + r +a++sl+yeA+ r++dPvyG+vg+i+ l+qq++ ++++la++k CCG007181.1 5 RCAACKYLRRRCPSDCIFSPYFPSNNPQRFACVHRIYGASNVAKMLQQLPAHLRAAAADSLYYEAQSRTEDPVYGCVGIISLLHQQIHGVESQLAKTK 102 6**********************************************************************************************999 PP DUF260 99 ee 100 +e CCG007181.1 103 AE 104 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.982	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.4E-41	5	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MISGRCAACK YLRRRCPSDC IFSPYFPSNN PQRFACVHRI YGASNVAKML QQLPAHLRAA 60 AADSLYYEAQ SRTEDPVYGC VGIISLLHQQ IHGVESQLAK TKAEIAVLNS LAQEPAQIQE 120 NEVEASFNNF LLEQDNIACG QYFSHSTYIP SNFM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-37	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-37	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011030192.1	1e-112	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	1e-52	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	B9I4F9	1e-105	B9I4F9_POPTR; Uncharacterized protein
STRING	POPTR_0012s13910.1	1e-106	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3697	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	4e-55	LOB domain-containing protein 24