PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG007195.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 312aa MW: 33062.1 Da PI: 7.7281

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG007195.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.6	2.2e-34	80	149	4	73
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +k+ +++hTkv+gR+RRvR++a+caar+F+L++eLG+++ ++ti WLl+ a++ai+++tgt++ +a ++ CCG007195.1 80 AKRNRKDRHTKVEGRGRRVRMPATCAARIFQLTRELGHKSEGETISWLLEHAEAAIIAATGTGTVPAIAV 149 78999*********************************************************77776333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-28	83	158	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.452	84	138	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MDSPPHHHHR TLEKIDKEQS ITTASLSSQP ELKDDNLTDP EESQEFEEHD NNERINNGSS 60 SSSLVLHQVQ RKQQQVVIAA KRNRKDRHTK VEGRGRRVRM PATCAARIFQ LTRELGHKSE 120 GETISWLLEH AEAAIIAATG TGTVPAIAVS VNGTLKIPTE TPPRTTAEAD IDAVGLVPNK 180 KRKRPCNSDF VDLTEAAHQN SVSSGLAPIA STSPQGLVPI WPMGTLLFPQ GSSVSVGVGE 240 SNQAPFWAFP AASTTPCFNM AAKPISSLVS AMQPGVQLAG NVGVGFGGGG SLGSGGSPSN 300 NIGSMSSSLR IK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011030052.1	1e-152	PREDICTED: transcription factor TCP19-like isoform X2
Refseq	XP_011030053.1	1e-152	PREDICTED: transcription factor TCP19-like isoform X2
Swissprot	Q9LT89	6e-64	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A2K1YD48	1e-177	A0A2K1YD48_POPTR; Uncharacterized protein
STRING	POPTR_0012s13700.1	1e-166	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	1e-46	TCP family protein