PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007232.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 293aa    MW: 33331.3 Da    PI: 6.8523
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007232.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l   v q+G g+W++++   g+ Rt+k+c++rw +yl
      CCG007232.1 17 KGLWSPEEDQRLRSHVFQHGHGCWSSVPINAGLQRTGKSCRLRWINYL 64
                     678*******************************************97 PP
2Myb_DNA-binding59.48.1e-1970115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++teE+e ++ ++++lG++ W+ Ia++++ gRt++++k++w++yl
      CCG007232.1  70 RGAFSTEEEETILTLHRMLGNK-WSQIAQHLP-GRTDNEIKNHWHSYL 115
                      89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-221267IPR009057Homeodomain-like
PROSITE profilePS5129416.4521264IPR017930Myb domain
SuperFamilySSF466891.25E-2914111IPR009057Homeodomain-like
SMARTSM007176.7E-121666IPR001005SANT/Myb domain
PfamPF002495.5E-151764IPR001005SANT/Myb domain
CDDcd001678.36E-112064No hitNo description
PROSITE profilePS5129428.1965119IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2668119IPR009057Homeodomain-like
SMARTSM007171.2E-1669117IPR001005SANT/Myb domain
PfamPF002494.1E-1770115IPR001005SANT/Myb domain
CDDcd001675.97E-1272115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGCKSSDKPK PKLRHRKGLW SPEEDQRLRS HVFQHGHGCW SSVPINAGLQ RTGKSCRLRW  60
INYLRPGLKR GAFSTEEEET ILTLHRMLGN KWSQIAQHLP GRTDNEIKNH WHSYLKKKLF  120
KTEGMESPNK TQSASSNSDD MDLSPCPKRL KMQSPESSMN MEKPSTDIDR PVFPWMFDSL  180
KEPNRSSLLP KVMFAEWLSL DSFASSGEPV VSKITFDHNP SFQDTSFMHD YLLEEGAFGG  240
DYQNSPSDGS SGDIFSSEFK FESQSPGNEF DFSSGEDLCR VFNSSNIGDV MYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251711927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9297251e-73JQ929725.1 Populus tremula MYB transcription factor (MYB19) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030095.10.0PREDICTED: transcription factor LAF1-like
SwissprotQ9M0K45e-59LAF1_ARATH; Transcription factor LAF1
TrEMBLB9I4990.0B9I499_POPTR; Uncharacterized protein
STRINGPOPTR_0012s13260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.12e-61myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]