PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG007252.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 682aa MW: 76340.4 Da PI: 7.4355

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG007252.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.0009	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH+r+H CCG007252.1 77 KCSKCSREFCSSINYRRHLRVH 98 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.346	76	103	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	99	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence Send to blast
MPVVKPVSSI IDVMRPGEGN DSSLDTFIRD AIGKQPLLSF SRPNDNPVQW IQLLHALDQP 60 DYPGWPLLTP LKAQMQKCSK CSREFCSSIN YRRHLRVHHR LKRLDKDSAK NRDLLGAFWD 120 KLSEDEAKEI LSFKDVTFEE VPGSSIIRSL MTVIRKPGIS SLTQSCWRAG SALLDLVQGR 180 PSRFPLSSGQ LFSILDDASE KTLLCGTAVL IQKYIFDGGA GKIGLETKNI VACTSFVVEQ 240 KLINAWLADQ DAEALRCQKL LVEEEEAAQR RQVELLERKR QKKLRLKEQK EKEQRLDDKE 300 CIEDMLEAVP QAEQSCPLAI SDSDTLGSEI LPDDVPSFLE PLQLPRTDED FDLENQMGCG 360 GGRSMLQGKS HMHIVVARWH GPSKSQRNHL SYGFHANQNS HAPKPGTIQK HGNQRDFKPG 420 PVMNGNRKWS RKPKPEYNGE SLKARMQKEV INVLDHDKKG EVLIGSISVT LGDCSHDEGN 480 NLDGARDDCL VDHEILKKKN VQEKHNRPDS VQYGTNHSTV KLWRPVSRNG SKDLMLVENG 540 RRECQHDNID GKGEDQNFND SSLRSCAMDN NFGGMENGSL PGGLLPGVLQ LTSHEARAFL 600 AERWKEAIAA EHVKLALSPD YQIATNHSSD TSKHNDISSA ENQLVNVEAQ EPLTSGAGRA 660 KYKTKPDNGV KLKYIPKQRT II

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence Send to blast

MPVVKPVSSI IDVMRPGEGN DSSLDTFIRD AIGKQPLLSF SRPNDNPVQW IQLLHALDQP  60
DYPGWPLLTP LKAQMQKCSK CSREFCSSIN YRRHLRVHHR LKRLDKDSAK NRDLLGAFWD  120
KLSEDEAKEI LSFKDVTFEE VPGSSIIRSL MTVIRKPGIS SLTQSCWRAG SALLDLVQGR  180
PSRFPLSSGQ LFSILDDASE KTLLCGTAVL IQKYIFDGGA GKIGLETKNI VACTSFVVEQ  240
KLINAWLADQ DAEALRCQKL LVEEEEAAQR RQVELLERKR QKKLRLKEQK EKEQRLDDKE  300
CIEDMLEAVP QAEQSCPLAI SDSDTLGSEI LPDDVPSFLE PLQLPRTDED FDLENQMGCG  360
GGRSMLQGKS HMHIVVARWH GPSKSQRNHL SYGFHANQNS HAPKPGTIQK HGNQRDFKPG  420
PVMNGNRKWS RKPKPEYNGE SLKARMQKEV INVLDHDKKG EVLIGSISVT LGDCSHDEGN  480
NLDGARDDCL VDHEILKKKN VQEKHNRPDS VQYGTNHSTV KLWRPVSRNG SKDLMLVENG  540
RRECQHDNID GKGEDQNFND SSLRSCAMDN NFGGMENGSL PGGLLPGVLQ LTSHEARAFL  600
AERWKEAIAA EHVKLALSPD YQIATNHSSD TSKHNDISSA ENQLVNVEAQ EPLTSGAGRA  660
KYKTKPDNGV KLKYIPKQRT II

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	283	ERKRQKKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011030138.1	0.0	PREDICTED: uncharacterized protein LOC105129670
TrEMBL	A0A2K1YDH3	0.0	A0A2K1YDH3_POPTR; Uncharacterized protein
STRING	POPTR_0012s13010.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4517	27	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-127	C2H2-like zinc finger protein